D. rerio Gene: irf4b - ENSDARG00000055374 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055374
Nameirf4b
Descriptioninterferon regulatory factor 4b [Source:ZFIN;Acc:ZDB-GENE-041001-131]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-25e12.2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.72e3
  • 3.72e3
87.54
  • 87.54
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
4.41e3
  • 4.41e3
  • 6.64e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.91e3
85.22
  • 85.22
  • 77.77
  • 76.66
  • 76.46
  • 74.99
  • 73.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007097chordo neural hinge
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 4.98e3
  • 7.47e3
83.33
  • 83.33
  • 83.33
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.89e3
  • 6.89e3
  • 7.47e3
76.92
  • 76.92
  • 74.99
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000026Segmentation:14-19 somites
6.97e3
  • 6.97e3
76.66
  • 76.66
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.22e3
  • 8.22e3
  • 8.22e3
  • 8.72e3
72.48
  • 72.48
  • 72.48
  • 70.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
8.30e3
  • 8.30e3
  • 8.65e3
72.21
  • 72.21
  • 71.04
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.83e3
  • 8.83e3
  • 8.96e3
70.44
  • 70.44
  • 69.98
AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.21e4
  • 1.21e4
  • 1.29e4
  • 1.29e4
59.36
  • 59.36
  • 56.65
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.28e4
  • 1.28e4
  • 1.38e4
  • 1.38e4
57.13
  • 57.13
  • 53.83
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.44
  • 54.44
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.42e4
  • 1.42e4
  • 1.42e4
  • 1.42e4
52.60
  • 52.60
  • 52.60
  • 52.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.38
  • 50.38
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.48e4
  • 1.48e4
50.29
  • 50.29
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.77
  • 48.77
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.62e4
  • 1.62e4
45.62
  • 45.62
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.58
  • 45.58
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.62
  • 41.62
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.58
  • 38.58
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.46
  • 38.46
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.21
  • 34.21
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.24
  • 32.24
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.42
  • 28.42
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.25e4
  • 2.25e4
24.74
  • 24.74
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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