D. rerio Gene: foxc1b - ENSDARG00000055398 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055398
Namefoxc1b
Descriptionforkhead box C1b [Source:ZFIN;Acc:ZDB-GENE-010302-2]
OrganismDanio rerio (zebrafish)
Synonym(s)foxc1.2, id:ibd5079

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003089sclerotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
2.49e3
  • 2.49e3
  • 1.49e4
91.67
  • 91.67
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
  • 8.44e3
91.64
  • 91.64
  • 71.74
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.67e3
  • 2.67e3
91.06
  • 91.06
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.12e3
  • 4.12e3
  • 1.05e4
86.20
  • 86.20
  • 64.79
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.40e3
  • 5.40e3
81.94
  • 81.94
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.40e3
  • 5.40e3
81.92
  • 81.92
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.88e3
  • 5.88e3
80.32
  • 80.32
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
5.91e3
  • 5.91e3
  • 6.99e3
  • 7.13e3
  • 8.14e3
  • 8.36e3
  • 8.53e3
  • 9.06e3
  • 9.69e3
  • 1.22e4
  • 1.23e4
80.20
  • 80.20
  • 76.60
  • 76.14
  • 72.74
  • 72.01
  • 71.43
  • 69.68
  • 67.56
  • 59.08
  • 58.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
6.10e3
  • 6.10e3
  • 7.06e3
  • 7.75e3
79.57
  • 79.57
  • 76.35
  • 74.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
6.72e3
  • 6.72e3
  • 8.96e3
  • 9.13e3
77.49
  • 77.49
  • 69.98
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
6.87e3
  • 6.87e3
  • 7.29e3
  • 8.81e3
  • 8.92e3
  • 9.36e3
  • 9.53e3
  • 9.88e3
  • 1.00e4
  • 1.01e4
  • 1.05e4
  • 1.11e4
  • 1.19e4
  • 1.41e4
  • 1.47e4
  • 1.49e4
77.00
  • 77.00
  • 75.58
  • 70.50
  • 70.15
  • 68.68
  • 68.11
  • 66.92
  • 66.47
  • 66.35
  • 64.69
  • 62.88
  • 60.28
  • 52.86
  • 50.68
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.34e3
  • 7.34e3
75.42
  • 75.42
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
7.39e3
  • 7.39e3
  • 1.14e4
  • 1.26e4
  • 1.30e4
  • 1.55e4
75.26
  • 75.26
  • 61.92
  • 57.66
  • 56.34
  • 48.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002531paired fin bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.12e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 62.50
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.05e3
  • 8.05e3
  • 1.43e4
73.05
  • 73.05
  • 52.20
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.14e3
  • 9.14e3
69.40
  • 69.40
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.31e3
  • 9.31e3
68.82
  • 68.82
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
9.42e3
  • 9.42e3
  • 9.96e3
68.46
  • 68.46
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
  • 1.44e4
57.80
  • 57.80
  • 51.76
AEIR
  • AEIR
  • AEIR
UBERON:0005805dorsal aorta
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.35
  • 56.35
AEIR
  • AEIR
UBERON:0014907intersomitic vessel
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000033Hatching:Long-pec
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.91
  • 51.91
AEIR
  • AEIR
UBERON:0004017periocular mesenchyme
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:2000096cardinal system
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000071blood vessel endothelial cell
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001073axial vasculature
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.64
  • 48.64
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.16
  • 47.16
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.72
  • 46.72
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.15
  • 46.15
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.47
  • 44.47
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.44
  • 41.44
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.36
  • 41.36
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.47
  • 40.47
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.81e4
  • 1.81e4
39.30
  • 39.30
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.01
  • 35.01
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAF219950, BC046028, BX510653
EnsemblENSDARG00000055398 (foxc1b)
Uniprot/SWISSPROTFXC1B_DANRE, Q9DE24
ZFINZDB-GENE-010302-2 (foxc1b)

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