D. rerio Gene: lrit3a - ENSDARG00000055463 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055463
Namelrit3a
Descriptioninfo leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a [Source:ZFIN;Acc:ZDB-GENE-080723-63]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:195063
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.02e3
  • 1.02e3
96.58
  • 96.58
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.01e3
  • 5.01e3
  • 1.17e4
83.21
  • 83.21
  • 60.86
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.41e3
  • 5.41e3
81.90
  • 81.90
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
6.20e3
  • 6.20e3
  • 7.03e3
79.24
  • 79.24
  • 76.45
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.86e3
  • 8.86e3
70.34
  • 70.34
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.00e4
  • 1.00e4
66.40
  • 66.40
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
1.14e4
  • 1.14e4
  • 2.03e4
61.90
  • 61.90
  • 32.06
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.27e4
  • 1.27e4
  • 2.31e4
57.60
  • 57.60
  • 22.79
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.93
  • 47.93
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.64
  • 44.64
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.52
  • 40.52
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.44
  • 36.44
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.09
  • 31.09
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.25
  • 30.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000055463 (lrit3a)
ZFINZDB-GENE-080723-63 (lrit3a)
EMBLBC163761, BX510944
Uniprot/SPTREMBLB3DK88, B3DK88_DANRE

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