Gene: cdc16 - ENSDARG00000055470 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000055470
Name	cdc16
Description	cell division cycle 16 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-051113-132]
Organism	Danio rerio (zebrafish)
Synonym(s)	vij, zgc:123264

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000468	multi-cellular organism	[+] 9 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud ZFS:0000033Hatching:Long-pec UBERON:0004707pharyngula stage ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage	1.54e3 1.54e3 5.77e3 9.96e3 1.17e4 1.22e4 1.22e4 1.24e4 1.30e4 1.45e4	94.85353 94.85353 80.67029 66.64993 60.69923 59.07919 59.07919 58.31993 56.37622 51.41533	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000992	female gonad	[+] 2 stages UBERON:0000066fully formed stage UBERON:0000104life cycle	1.76e3 1.76e3 1.50e4	94.10629 94.10629 49.88950	AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	2.29e3 2.29e3 3.00e3	92.32331 92.32331 89.96407	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 3 stages ZFS:0000035Larval:Protruding-mouth ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	2.30e3 2.30e3 8.05e3 1.21e4	92.30975 92.30975 73.06004 59.36413	AEIR AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	3.00e3 3.00e3	89.95078 89.95078	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	3.63e3 3.63e3 3.96e3	87.86261 87.86261 86.75033	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	3.83e3 3.83e3	87.17292 87.17292	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	3.93e3 3.93e3	86.83320 86.83320	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	4.58e3 4.58e3	84.66664 84.66664	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	4.96e3 4.96e3	83.39989 83.39989	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	4.99e3 4.99e3	83.30710 83.30710	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000037Larval:Day 5	5.20e3 5.20e3 6.17e3 7.09e3 7.92e3 1.14e4	82.59314 82.59314 79.35864 76.25162 73.48224 61.99424	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	5.55e3 5.55e3	81.43187 81.43187	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	5.85e3 5.85e3 1.01e4	80.41721 80.41721 66.17553	AEIR AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	6.38e3 6.38e3	78.65586 78.65586	AEIR AEIR
UBERON:0000473	testis	[+] 2 stages UBERON:0000066fully formed stage UBERON:0000104life cycle	6.58e3 6.58e3 1.50e4	77.95680 77.95680 49.91628	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	7.49e3 7.49e3	74.93042 74.93042	AEIR AEIR
UBERON:0000033	head	[+] 3 stages ZFS:0000037Larval:Day 5 ZFS:0000035Larval:Protruding-mouth UBERON:0000066fully formed stage	8.05e3 8.05e3 1.12e4 1.55e4	73.04296 73.04296 62.49831 48.20346	AEIR AEIR AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	9.83e3 9.83e3	67.07809 67.07809	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	9.91e3 9.91e3	66.83187 66.83187	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.06e4 1.06e4	64.39283 64.39283	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.06e4 1.06e4	64.35954 64.35954	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.09e4 1.09e4	63.43971 63.43971	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.12e4 1.12e4	62.60999 62.60999	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.12e4 1.12e4	62.42782 62.42782	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.12e4 1.12e4	62.34806 62.34806	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.22e4 1.22e4	59.30051 59.30051	AEIR AEIR
UBERON:0010312	immature eye	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.35e4 1.35e4	54.73345 54.73345	AEIR AEIR
UBERON:0001007	digestive system	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4	49.99833 49.99833	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.93972 49.93972	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Cross-references

EMBL	BX601644, CR936415
Ensembl	ENSDARG00000055470 (cdc16)
Uniprot/SPTREMBL	B0S729, B0S729_DANRE, B0V222, B0V222_DANRE
ZFIN	ZDB-GENE-051113-132 (cdc16)