D. rerio Gene: chrna6 - ENSDARG00000055559 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055559
Namechrna6
Descriptioncholinergic receptor, nicotinic, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-090312-91]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-234d14.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.11e3
  • 1.11e3
  • 1.12e4
  • 1.39e4
96.27
  • 96.27
  • 62.50
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.27e3
  • 7.27e3
  • 1.19e4
75.66
  • 75.66
  • 60.08
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.62e3
  • 9.62e3
67.80
  • 67.80
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.31e4
  • 1.36e4
66.67
  • 66.67
  • 56.22
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005499rhombomere 1
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.83
  • 64.83
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.05e4
  • 1.05e4
  • 1.63e4
  • 2.03e4
  • 2.07e4
  • 2.13e4
64.80
  • 64.80
  • 45.30
  • 32.13
  • 30.83
  • 28.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
  • 1.34e4
  • 1.37e4
62.50
  • 62.50
  • 55.24
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002148locus ceruleus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.19e4
  • 1.19e4
  • 1.49e4
  • 1.49e4
60.00
  • 60.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.26e4
  • 1.26e4
  • 1.35e4
  • 1.49e4
  • 1.49e4
57.87
  • 57.87
  • 54.73
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.29e4
  • 1.29e4
  • 1.34e4
  • 1.49e4
56.65
  • 56.65
  • 54.99
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000247Rohon-Beard neuron
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
54.15
  • 54.15
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.39e4
  • 1.39e4
  • 1.49e4
53.55
  • 53.55
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.42e4
  • 1.42e4
  • 2.03e4
52.48
  • 52.48
  • 32.01
AEIR
  • AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001944pretectal region
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
CL:0000561amacrine cell
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.78
  • 49.78
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.60e4
  • 1.60e4
46.30
  • 46.30
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.18
  • 43.18
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
37.93
  • 37.93
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.03
  • 28.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCR376846, CT025656
EnsemblENSDARG00000055559 (chrna6)
Uniprot/SPTREMBLF1QR92, F1QR92_DANRE
ZFINZDB-GENE-090312-91 (chrna6)

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