D. rerio Gene: pcolce2b - ENSDARG00000055575 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055575
Namepcolce2b
Descriptionprocollagen C-endopeptidase enhancer 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1177]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:63590

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
  • 8.68e3
91.49
  • 91.49
  • 70.94
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.44e3
  • 6.44e3
78.44
  • 78.44
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.02e3
  • 8.02e3
73.15
  • 73.15
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.15e3
  • 8.15e3
  • 1.43e4
72.72
  • 72.72
  • 52.16
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.28e3
  • 8.28e3
72.29
  • 72.29
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.31e3
  • 8.31e3
72.19
  • 72.19
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
8.35e3
  • 8.35e3
  • 1.37e4
72.06
  • 72.06
  • 54.22
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.44e3
  • 8.44e3
71.73
  • 71.73
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.38e3
  • 9.38e3
68.58
  • 68.58
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.43e3
  • 9.43e3
  • 1.02e4
68.42
  • 68.42
  • 65.88
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.00e4
  • 1.00e4
  • 1.09e4
  • 1.18e4
66.40
  • 66.40
  • 63.44
  • 60.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
1.08e4
  • 1.08e4
  • 1.18e4
  • 1.30e4
  • 1.38e4
  • 1.39e4
  • 1.42e4
  • 1.43e4
  • 1.44e4
  • 1.47e4
  • 1.48e4
  • 1.52e4
  • 1.54e4
63.77
  • 63.77
  • 60.49
  • 56.61
  • 53.64
  • 53.30
  • 52.37
  • 51.99
  • 51.80
  • 50.81
  • 50.56
  • 49.18
  • 48.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.10e4
  • 1.10e4
63.13
  • 63.13
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
  • 1.24e4
  • 1.31e4
  • 1.32e4
  • 1.35e4
  • 1.36e4
  • 1.38e4
  • 1.39e4
  • 1.45e4
  • 1.46e4
62.77
  • 62.77
  • 58.37
  • 56.14
  • 55.95
  • 54.77
  • 54.50
  • 53.76
  • 53.58
  • 51.38
  • 51.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
62.57
  • 62.57
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.15e4
  • 1.15e4
61.50
  • 61.50
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.49
  • 58.49
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.27e4
  • 1.27e4
57.47
  • 57.47
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.57
  • 56.57
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.30e4
  • 1.30e4
56.48
  • 56.48
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.83
  • 54.83
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.78
  • 54.78
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.46e4
  • 1.46e4
  • 1.75e4
51.00
  • 51.00
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.17
  • 49.17
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.57
  • 47.57
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.36
  • 45.36
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.52
  • 42.52
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.74e4
  • 1.74e4
41.85
  • 41.85
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBX470196, CT573382
EnsemblENSDARG00000055575 (pcolce2b)
Uniprot/SPTREMBLF1R774, F1R774_DANRE
ZFINZDB-GENE-040426-1177 (pcolce2b)

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