D. rerio Gene: capn2b - ENSDARG00000055592 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055592
Namecapn2b
Descriptioncalpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
OrganismDanio rerio (zebrafish)
Synonym(s)im:6908877, zgc:109906

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
540
  • 540
98.20
  • 98.20
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.78e3
  • 1.78e3
  • 1.51e4
94.05
  • 94.05
  • 49.41
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
92.06
  • 92.06
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.88e3
  • 2.88e3
  • 3.03e3
  • 3.23e3
  • 4.46e3
  • 7.36e3
90.37
  • 90.37
  • 89.85
  • 89.18
  • 85.07
  • 75.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.33e3
  • 3.33e3
  • 4.33e3
88.84
  • 88.84
  • 85.49
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.60e3
  • 3.60e3
87.95
  • 87.95
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.88e3
  • 3.88e3
87.02
  • 87.02
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.20e3
  • 4.20e3
85.95
  • 85.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
84.27
  • 84.27
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
5.77e3
  • 5.77e3
  • 9.96e3
  • 1.05e4
  • 1.08e4
  • 1.10e4
  • 1.14e4
  • 1.39e4
  • 1.44e4
  • 1.47e4
80.67
  • 80.67
  • 66.65
  • 64.69
  • 63.87
  • 63.32
  • 61.75
  • 53.30
  • 51.82
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
6.22e3
  • 6.22e3
  • 6.64e3
  • 6.79e3
  • 7.47e3
  • 7.97e3
  • 8.30e3
  • 8.53e3
  • 9.19e3
79.16
  • 79.16
  • 77.77
  • 77.27
  • 75.00
  • 73.32
  • 72.22
  • 71.43
  • 69.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
6.50e3
  • 6.50e3
  • 1.94e4
78.22
  • 78.22
  • 34.92
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.94e3
  • 6.94e3
  • 9.44e3
76.78
  • 76.78
  • 68.40
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.27e3
  • 7.27e3
75.67
  • 75.67
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.22e3
  • 8.30e3
74.99
  • 74.99
  • 72.48
  • 72.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.95e3
  • 7.95e3
73.39
  • 73.39
AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.22e3
  • 8.22e3
  • 8.22e3
  • 8.54e3
  • 9.67e3
  • 1.03e4
  • 1.14e4
  • 1.23e4
72.48
  • 72.48
  • 72.48
  • 71.41
  • 67.63
  • 65.61
  • 61.75
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.22e3
  • 8.22e3
  • 9.96e3
72.48
  • 72.48
  • 66.65
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.97e3
  • 8.97e3
69.97
  • 69.97
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.05e3
  • 9.05e3
69.68
  • 69.68
AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.13e3
  • 9.13e3
  • 1.32e4
  • 1.39e4
  • 1.39e4
69.43
  • 69.43
  • 55.86
  • 53.31
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.85e3
  • 9.85e3
67.01
  • 67.01
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.88
  • 64.88
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.83
  • 63.83
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
  • 1.37e4
59.36
  • 59.36
  • 54.15
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 1.34e4
  • 1.78e4
59.08
  • 59.08
  • 54.99
  • 40.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003062primitive knot
  • ZFS:0000019Gastrula:Shield
1.22e4
  • 1.22e4
59.08
  • 59.08
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.28
  • 58.28
AEIR
  • AEIR
UBERON:0000162cloaca
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
  • 1.37e4
  • 1.37e4
  • 1.37e4
54.15
  • 54.15
  • 54.15
  • 54.15
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000004anterior axial hypoblast
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
1.39e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
53.55
  • 53.55
  • 53.55
  • 53.55
  • 53.55
  • 53.55
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000931proctodeum
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.61e4
  • 1.61e4
46.18
  • 46.18
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.69
  • 42.69
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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