D. rerio Gene: acta1b - ENSDARG00000055618 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055618
Nameacta1b
Descriptionactin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
OrganismDanio rerio (zebrafish)
Synonym(s)actc, actc1, actc1gn, cardiofunk, cfk, hm:zeh0631, zeh0631
Orthologs(s)75 orthologs
Paralog(s)14 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
69.0
  • 69.0
  • 90.5
  • 134
  • 210
  • 239
  • 370
  • 714
  • 2.78e3
  • 6.12e3
  • 1.09e4
  • 1.09e4
  • 1.09e4
  • 1.09e4
  • 1.11e4
  • 1.16e4
  • 1.26e4
  • 1.46e4
  • 1.49e4
99.77
  • 99.77
  • 99.70
  • 99.56
  • 99.30
  • 99.20
  • 98.77
  • 97.61
  • 90.69
  • 79.51
  • 63.55
  • 63.48
  • 63.48
  • 63.38
  • 62.81
  • 61.10
  • 57.77
  • 51.12
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
88.3
  • 88.3
  • 119
  • 144
99.71
  • 99.71
  • 99.61
  • 99.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
89.7
  • 89.7
99.70
  • 99.70
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
90.5
  • 90.5
  • 223
  • 6.90e3
99.70
  • 99.70
  • 99.26
  • 76.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
128
  • 128
  • 166
  • 166
  • 180
  • 309
  • 376
  • 772
  • 1.80e3
  • 3.76e3
  • 1.06e4
99.57
  • 99.57
  • 99.45
  • 99.45
  • 99.40
  • 98.97
  • 98.74
  • 97.42
  • 93.97
  • 87.41
  • 64.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
226
  • 226
99.25
  • 99.25
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
456
  • 456
98.48
  • 98.48
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
587
  • 587
98.04
  • 98.04
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.42e3
  • 1.42e3
  • 4.37e3
95.26
  • 95.26
  • 85.38
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
  • 1.54e4
92.86
  • 92.86
  • 48.43
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.79
  • 89.79
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.03e3
  • 4.03e3
86.51
  • 86.51
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.32e3
  • 4.32e3
85.54
  • 85.54
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.75e3
  • 5.75e3
80.76
  • 80.76
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.10e3
  • 7.10e3
76.22
  • 76.22
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.34e3
  • 7.34e3
75.44
  • 75.44
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.32e3
  • 8.32e3
72.13
  • 72.13
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
8.84e3
  • 8.84e3
  • 1.40e4
  • 1.51e4
  • 1.75e4
70.39
  • 70.39
  • 53.26
  • 49.28
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.17e3
  • 9.17e3
69.30
  • 69.30
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
  • 1.11e4
65.47
  • 65.47
  • 62.78
AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
1.08e4
  • 1.08e4
  • 1.12e4
  • 1.33e4
63.87
  • 63.87
  • 62.48
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.84
  • 57.84
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.31e4
  • 1.31e4
  • 1.39e4
  • 1.66e4
56.22
  • 56.22
  • 53.41
  • 44.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000027Segmentation:20-25 somites
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.42e4
  • 1.42e4
52.50
  • 52.50
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.43e4
  • 1.43e4
  • 1.63e4
  • 1.67e4
52.07
  • 52.07
  • 45.54
  • 44.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.69
  • 51.69
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.41
  • 50.41
AEIR
  • AEIR
CL:0000858fast muscle myoblast
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.88
  • 49.88
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.29
  • 44.29
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.16
  • 38.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species75 genesCompare expression

Orthology information comes from OMA : ENSDARG00000055618.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi4 genesCompare expression
Clupeocephala5 genesCompare expression
Euteleostomi7 genesCompare expression
Chordata9 genesCompare expression
Metazoa13 genesCompare expression
Eukaryota14 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000055618.

Cross-references

EnsemblENSDARG00000055618 (acta1b)
ZFINZDB-GENE-030131-55 (acta1b)
EMBLAY222742, CR762497
Uniprot/SPTREMBLQ6XNL8, Q6XNL8_DANRE

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