D. rerio Gene: nubp2 - ENSDARG00000055653 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055653
Namenubp2
Descriptionnucleotide binding protein 2 (MinD homolog, E. coli) [Source:ZFIN;Acc:ZDB-GENE-051023-10]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:123336
Orthologs(s)22 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.45e3
  • 2.45e3
91.79
  • 91.79
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.46
  • 91.46
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.54e3
  • 3.54e3
88.14
  • 88.14
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.22
  • 87.22
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.93e3
  • 3.93e3
86.86
  • 86.86
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.98e3
  • 3.98e3
86.67
  • 86.67
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.06e3
  • 4.06e3
  • 4.50e3
  • 5.09e3
  • 1.29e4
86.42
  • 86.42
  • 84.92
  • 82.96
  • 56.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
4.31e3
  • 4.31e3
  • 4.90e3
  • 5.17e3
  • 5.52e3
  • 6.02e3
  • 6.06e3
  • 6.43e3
  • 6.53e3
  • 8.72e3
  • 1.10e4
85.58
  • 85.58
  • 83.59
  • 82.68
  • 81.53
  • 79.85
  • 79.70
  • 78.48
  • 78.14
  • 70.82
  • 63.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.32e3
  • 4.32e3
85.54
  • 85.54
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.62e3
  • 4.62e3
84.54
  • 84.54
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.62e3
  • 4.62e3
84.53
  • 84.53
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.51
  • 84.51
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
  • 6.85e3
84.49
  • 84.49
  • 77.08
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.96e3
  • 4.96e3
83.39
  • 83.39
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.10e3
  • 5.10e3
  • 5.55e3
82.93
  • 82.93
  • 81.40
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.12e3
  • 5.12e3
82.88
  • 82.88
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.12e3
  • 5.12e3
82.84
  • 82.84
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.69e3
  • 5.69e3
80.95
  • 80.95
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.81e3
  • 5.81e3
80.54
  • 80.54
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.90e3
  • 5.90e3
80.25
  • 80.25
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.11e3
  • 6.11e3
79.53
  • 79.53
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.25e3
  • 6.25e3
79.08
  • 79.08
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.38e3
  • 6.38e3
  • 7.60e3
  • 8.84e3
78.65
  • 78.65
  • 74.55
  • 70.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.57e3
  • 6.57e3
  • 6.67e3
  • 6.81e3
  • 6.87e3
  • 6.91e3
  • 7.65e3
  • 8.05e3
  • 8.09e3
  • 9.01e3
  • 9.15e3
  • 9.21e3
  • 9.32e3
  • 9.53e3
  • 1.02e4
  • 1.49e4
  • 1.50e4
78.00
  • 78.00
  • 77.68
  • 77.19
  • 76.98
  • 76.86
  • 74.39
  • 73.04
  • 72.91
  • 69.83
  • 69.37
  • 69.15
  • 68.78
  • 68.08
  • 65.74
  • 50.25
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.92e3
  • 6.92e3
  • 8.65e3
76.84
  • 76.84
  • 71.02
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
7.31e3
  • 7.31e3
  • 9.11e3
  • 9.39e3
  • 9.72e3
  • 1.03e4
  • 1.03e4
75.53
  • 75.53
  • 69.51
  • 68.56
  • 67.47
  • 65.64
  • 65.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.50e3
  • 7.50e3
  • 8.09e3
74.88
  • 74.88
  • 72.90
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.67e3
  • 7.67e3
74.33
  • 74.33
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
9.65e3
  • 9.65e3
  • 1.02e4
  • 1.03e4
  • 1.03e4
  • 1.07e4
67.67
  • 67.67
  • 65.73
  • 65.64
  • 65.56
  • 64.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.02e4
  • 1.02e4
65.77
  • 65.77
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.74
  • 51.74
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.26
  • 46.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species15 genesCompare expression
Bilateria21 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000055653.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000055653.

Cross-references

EnsemblENSDARG00000055653 (nubp2)
ZFINZDB-GENE-051023-10 (nubp2)
EMBLCU929145
Uniprot/SPTREMBLF1REW2, F1REW2_DANRE

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