D. rerio Gene: npas4a - ENSDARG00000055752 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055752
Namenpas4a
Descriptionneuronal PAS domain protein 4a [Source:ZFIN;Acc:ZDB-GENE-060616-396]
OrganismDanio rerio (zebrafish)
Synonym(s)npas4, nxf, q5i7e4, wu:fj52d04, zgc:136764
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000031Pharyngula:Prim-25
1.70e3
  • 1.70e3
  • 1.45e4
  • 1.80e4
94.31
  • 94.31
  • 51.33
  • 39.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
2.32e3
  • 2.32e3
  • 1.21e4
  • 1.50e4
  • 1.50e4
  • 1.50e4
  • 1.53e4
  • 1.81e4
92.23
  • 92.23
  • 59.36
  • 49.92
  • 49.81
  • 49.80
  • 48.76
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
3.58e3
  • 3.58e3
  • 1.55e4
  • 1.61e4
88.01
  • 88.01
  • 48.20
  • 46.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
4.47e3
  • 4.47e3
  • 2.04e4
85.04
  • 85.04
  • 31.63
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.48e3
  • 4.48e3
  • 7.00e3
85.00
  • 85.00
  • 76.55
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.00e4
  • 1.00e4
  • 1.17e4
  • 1.71e4
66.46
  • 66.46
  • 60.76
  • 42.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.29e4
  • 1.29e4
  • 1.49e4
56.65
  • 56.65
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.03
  • 31.03
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.33e4
  • 2.33e4
21.96
  • 21.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000055752.

Cross-references

EnsemblENSDARG00000055752 (npas4a)
ZFINZDB-GENE-060616-396 (npas4a)
EMBLAY847288, BC117648
Uniprot/SWISSPROTNPAS4_DANRE, Q1ECW2

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