D. rerio Gene: suv39h1b - ENSDARG00000055753 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055753
Namesuv39h1b
Descriptionsuppressor of variegation 3-9 homolog 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5105]
OrganismDanio rerio (zebrafish)
Synonym(s)fe47h06, wu:fb18a10, wu:fe47h06, zgc:136593
Orthologs(s)14 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.30e3
  • 1.30e3
  • 1.50e3
  • 1.77e3
  • 2.02e3
  • 2.92e3
95.65
  • 95.65
  • 94.99
  • 94.06
  • 93.25
  • 90.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.09e3
  • 2.09e3
92.99
  • 92.99
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.21e3
  • 2.21e3
  • 3.49e3
  • 3.94e3
  • 4.51e3
  • 5.14e3
  • 5.22e3
  • 5.72e3
  • 5.76e3
  • 7.18e3
  • 1.14e4
92.59
  • 92.59
  • 88.31
  • 86.79
  • 84.91
  • 82.78
  • 82.53
  • 80.85
  • 80.72
  • 75.95
  • 61.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.26e3
  • 2.26e3
92.45
  • 92.45
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.28e3
  • 2.28e3
92.37
  • 92.37
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.35e3
  • 2.35e3
  • 5.20e3
  • 1.04e4
92.14
  • 92.14
  • 82.59
  • 65.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
2.36e3
  • 2.36e3
  • 2.65e3
  • 2.92e3
  • 3.80e3
  • 4.04e3
  • 4.67e3
92.11
  • 92.11
  • 91.12
  • 90.22
  • 87.29
  • 86.46
  • 84.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.70
  • 90.70
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.79
  • 89.79
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.19e3
  • 3.19e3
89.33
  • 89.33
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000015Blastula:Dome
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • UBERON:0000104life cycle
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
3.38e3
  • 3.38e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.08e3
  • 4.14e3
  • 4.21e3
  • 4.39e3
  • 4.98e3
  • 4.98e3
  • 5.64e3
  • 6.26e3
  • 6.54e3
  • 6.55e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 6.97e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.79e3
  • 7.91e3
  • 1.13e4
  • 1.32e4
  • 1.35e4
  • 1.39e4
  • 1.41e4
  • 1.44e4
  • 1.45e4
  • 1.45e4
88.68
  • 88.68
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.35
  • 86.15
  • 85.91
  • 85.30
  • 83.33
  • 83.33
  • 81.12
  • 79.03
  • 78.12
  • 78.09
  • 77.77
  • 77.27
  • 77.27
  • 76.66
  • 76.66
  • 76.66
  • 76.46
  • 74.99
  • 73.93
  • 73.52
  • 62.12
  • 55.69
  • 54.86
  • 53.30
  • 52.91
  • 51.88
  • 51.51
  • 51.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.22
  • 87.22
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.15e3
  • 4.15e3
86.12
  • 86.12
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.76e3
  • 4.76e3
84.08
  • 84.08
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.92e3
  • 4.92e3
83.53
  • 83.53
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.93e3
  • 4.93e3
83.48
  • 83.48
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
82.98
  • 82.98
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.74e3
  • 5.74e3
80.78
  • 80.78
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.02e3
  • 6.02e3
  • 1.44e4
79.84
  • 79.84
  • 51.84
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.02e3
  • 6.02e3
79.84
  • 79.84
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.11e3
  • 6.11e3
79.55
  • 79.55
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.83e3
  • 6.83e3
  • 1.21e4
77.15
  • 77.15
  • 59.53
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
  • 9.51e3
  • 1.43e4
76.30
  • 76.30
  • 68.17
  • 52.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.91e3
  • 7.91e3
  • 1.59e4
73.53
  • 73.53
  • 46.70
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.14e3
  • 9.14e3
69.38
  • 69.38
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
9.25e3
  • 9.25e3
69.03
  • 69.03
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000031Pharyngula:Prim-25
1.02e4
  • 1.02e4
65.89
  • 65.89
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
1.02e4
  • 1.02e4
  • 1.23e4
  • 1.28e4
65.77
  • 65.77
  • 58.80
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000029Pharyngula:Prim-5
1.02e4
  • 1.02e4
65.77
  • 65.77
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
64.26
  • 64.26
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.11e4
  • 1.11e4
  • 1.27e4
  • 1.42e4
62.76
  • 62.76
  • 57.63
  • 52.45
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • UBERON:00072322 cell stage
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.10
  • 61.10
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
60.50
  • 60.50
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
  • 1.28e4
60.21
  • 60.21
  • 57.08
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.29
  • 56.29
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.33e4
  • 1.33e4
  • 1.34e4
55.55
  • 55.55
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.21
  • 54.21
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.82
  • 52.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000055753.

Cross-references

EnsemblENSDARG00000055753 (suv39h1b)
ZFINZDB-GENE-030131-5105 (suv39h1b)
EMBLBX544876
Uniprot/SPTREMBLB0S6M0, B0S6M0_DANRE

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