D. rerio Gene: ptpn3 - ENSDARG00000055784 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055784
Nameptpn3
Descriptionprotein tyrosine phosphatase, non-receptor type 3 [Source:ZFIN;Acc:ZDB-GENE-030131-2934]
OrganismDanio rerio (zebrafish)
Synonym(s)fc21h03, protein tyrosine phosphatase h1, ptp-h1, wu:fc21h03

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.85e3
  • 3.85e3
87.13
  • 87.13
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.05e3
  • 4.05e3
86.45
  • 86.45
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.23e3
  • 4.23e3
  • 4.90e3
85.85
  • 85.85
  • 83.59
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.17e3
  • 5.17e3
82.68
  • 82.68
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
81.99
  • 81.99
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.09e3
  • 6.09e3
79.62
  • 79.62
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.43e3
  • 6.43e3
78.46
  • 78.46
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.36e3
  • 7.36e3
75.35
  • 75.35
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.75e3
  • 7.75e3
74.04
  • 74.04
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.77e3
  • 7.77e3
  • 1.46e4
73.98
  • 73.98
  • 51.16
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
9.92e3
  • 9.92e3
  • 1.17e4
  • 1.19e4
  • 1.19e4
  • 1.56e4
66.79
  • 66.79
  • 60.86
  • 60.07
  • 60.04
  • 47.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.01e4
  • 1.01e4
  • 1.04e4
  • 1.18e4
  • 1.21e4
  • 1.23e4
  • 1.24e4
  • 1.46e4
  • 1.57e4
  • 1.65e4
  • 1.75e4
66.22
  • 66.22
  • 65.26
  • 60.47
  • 59.56
  • 58.87
  • 58.63
  • 51.13
  • 47.42
  • 44.80
  • 41.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.05e4
  • 1.05e4
  • 1.26e4
64.94
  • 64.94
  • 57.97
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.21
  • 64.21
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.16
  • 64.16
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
64.00
  • 64.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.70
  • 63.70
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.17e4
  • 1.17e4
60.96
  • 60.96
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.20e4
  • 1.20e4
59.80
  • 59.80
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
1.27e4
  • 1.27e4
  • 1.38e4
  • 1.40e4
  • 1.42e4
  • 1.44e4
  • 1.52e4
  • 1.52e4
  • 1.52e4
  • 1.53e4
  • 1.55e4
  • 1.55e4
  • 1.55e4
  • 1.64e4
57.64
  • 57.64
  • 53.91
  • 53.10
  • 52.50
  • 51.89
  • 49.21
  • 49.13
  • 49.00
  • 48.90
  • 48.18
  • 48.18
  • 48.00
  • 45.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.37
  • 56.37
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.31e4
  • 1.31e4
  • 1.36e4
  • 1.64e4
56.11
  • 56.11
  • 54.34
  • 45.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
55.90
  • 55.90
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.05
  • 55.05
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.43e4
  • 1.43e4
52.15
  • 52.15
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.43e4
  • 1.43e4
52.12
  • 52.12
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
  • 1.54e4
50.84
  • 50.84
  • 48.33
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.54e4
  • 1.54e4
  • 1.55e4
  • 1.69e4
  • 1.75e4
48.37
  • 48.37
  • 47.97
  • 43.58
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCR391910
EnsemblENSDARG00000055784 (ptpn3)
Uniprot/SPTREMBLF1QLN8, F1QLN8_DANRE
ZFINZDB-GENE-030131-2934 (ptpn3)

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