D. rerio Gene: msmo1 - ENSDARG00000055876 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055876
Namemsmo1
Descriptionmethylsterol monooxygenase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2670]
OrganismDanio rerio (zebrafish)
Synonym(s)sc4mol, wu:fb59g06, wu:fb66e06, zgc:56437
Orthologs(s)19 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
257
  • 257
99.14
  • 99.14
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
990
  • 990
96.69
  • 96.69
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.37e3
  • 1.37e3
95.41
  • 95.41
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
3.16e3
  • 3.16e3
  • 3.99e3
  • 1.28e4
  • 1.37e4
  • 1.47e4
  • 1.50e4
  • 1.50e4
  • 1.79e4
  • 1.81e4
89.42
  • 89.42
  • 86.64
  • 57.23
  • 54.09
  • 50.64
  • 49.92
  • 49.80
  • 40.18
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.48e3
  • 3.48e3
88.34
  • 88.34
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.52e3
  • 3.52e3
88.22
  • 88.22
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
3.63e3
  • 3.63e3
  • 7.16e3
  • 1.49e4
87.83
  • 87.83
  • 76.01
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
4.21e3
  • 4.21e3
  • 1.54e4
  • 1.59e4
  • 1.60e4
  • 1.72e4
  • 1.78e4
85.92
  • 85.92
  • 48.30
  • 46.90
  • 46.40
  • 42.36
  • 40.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.36e3
  • 4.36e3
  • 8.06e3
85.41
  • 85.41
  • 73.01
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.85e3
  • 4.85e3
  • 1.71e4
83.77
  • 83.77
  • 42.77
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
82.55
  • 82.55
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.31e3
  • 5.31e3
82.22
  • 82.22
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.20e3
  • 7.20e3
75.89
  • 75.89
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.17e3
  • 8.17e3
  • 1.25e4
72.63
  • 72.63
  • 58.14
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.28e3
  • 8.28e3
72.29
  • 72.29
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.26
  • 70.26
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.91e3
  • 8.91e3
70.18
  • 70.18
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.55e3
  • 9.55e3
68.02
  • 68.02
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.01e4
  • 1.01e4
  • 1.20e4
  • 1.20e4
66.30
  • 66.30
  • 59.88
  • 59.87
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.71
  • 65.71
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.04e4
  • 1.04e4
65.05
  • 65.05
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.79
  • 62.79
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.14e4
  • 1.14e4
61.81
  • 61.81
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000031Pharyngula:Prim-25
1.29e4
  • 1.29e4
56.79
  • 56.79
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000031Pharyngula:Prim-25
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.59e4
  • 1.59e4
46.90
  • 46.90
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.62e4
  • 1.62e4
45.81
  • 45.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000055876.

Cross-references

EnsemblENSDARG00000055876 (msmo1)
ZFINZDB-GENE-040426-2670 (msmo1)
EMBLCT583646
Uniprot/SPTREMBLF1QFS0, F1QFS0_DANRE

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