D. rerio Gene: zswim5 - ENSDARG00000055900 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055900
Namezswim5
Descriptionzinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
OrganismDanio rerio (zebrafish)
Synonym(s)fc05d01, sb:cb802, si:ch73-38p6.1, wu:fc05d01

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
1.05e3
  • 1.05e3
  • 1.61e3
  • 1.87e3
  • 8.49e3
  • 1.17e4
  • 1.20e4
96.50
  • 96.50
  • 94.62
  • 93.73
  • 71.57
  • 60.84
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.29e3
  • 1.29e3
95.68
  • 95.68
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.36e3
  • 1.36e3
95.45
  • 95.45
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
1.51e3
  • 1.51e3
  • 2.16e3
  • 2.17e3
  • 2.31e3
  • 2.52e3
  • 2.58e3
  • 2.61e3
  • 2.63e3
  • 2.92e3
  • 2.93e3
  • 3.05e3
  • 3.42e3
  • 5.77e3
  • 7.64e3
94.94
  • 94.94
  • 92.76
  • 92.74
  • 92.27
  • 91.57
  • 91.38
  • 91.26
  • 91.19
  • 90.22
  • 90.18
  • 89.80
  • 88.56
  • 80.68
  • 74.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
1.61e3
  • 1.61e3
  • 2.79e3
  • 3.83e3
  • 3.91e3
  • 3.97e3
  • 4.09e3
  • 4.70e3
  • 5.15e3
  • 5.43e3
  • 6.86e3
94.63
  • 94.63
  • 90.65
  • 87.17
  • 86.91
  • 86.72
  • 86.32
  • 84.25
  • 82.77
  • 81.82
  • 77.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.61e3
  • 2.61e3
91.25
  • 91.25
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.76e3
  • 2.76e3
90.78
  • 90.78
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
2.77e3
  • 2.77e3
  • 3.01e3
  • 3.19e3
  • 3.55e3
  • 3.78e3
  • 3.82e3
90.74
  • 90.74
  • 89.93
  • 89.31
  • 88.12
  • 87.34
  • 87.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.66e3
  • 3.66e3
  • 4.21e3
  • 5.01e3
87.74
  • 87.74
  • 85.90
  • 83.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.67e3
  • 3.67e3
87.72
  • 87.72
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.32e3
  • 4.32e3
  • 4.99e3
85.55
  • 85.55
  • 83.28
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.83e3
  • 4.83e3
83.84
  • 83.84
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.41e3
  • 5.41e3
  • 6.03e3
81.88
  • 81.88
  • 79.82
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
5.55e3
  • 5.55e3
  • 6.69e3
  • 7.44e3
  • 7.82e3
  • 8.03e3
81.43
  • 81.43
  • 77.61
  • 75.10
  • 73.83
  • 73.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.88e3
  • 5.88e3
80.31
  • 80.31
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.87e3
  • 6.87e3
77.01
  • 77.01
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.93e3
  • 6.93e3
  • 9.15e3
76.80
  • 76.80
  • 69.35
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.14e3
  • 7.14e3
76.09
  • 76.09
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.19e3
  • 7.19e3
75.92
  • 75.92
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.25e3
  • 7.25e3
75.72
  • 75.72
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.25e3
  • 8.25e3
72.36
  • 72.36
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.57e3
  • 8.57e3
71.30
  • 71.30
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.81e3
  • 8.81e3
70.50
  • 70.50
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.84e3
  • 8.84e3
70.40
  • 70.40
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.06e3
  • 9.06e3
69.68
  • 69.68
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.25e3
  • 9.25e3
69.05
  • 69.05
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.31e3
  • 9.31e3
68.82
  • 68.82
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.37e3
  • 9.37e3
68.64
  • 68.64
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.53e3
  • 9.53e3
68.09
  • 68.09
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.74
  • 67.74
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.03e4
  • 1.03e4
  • 1.07e4
  • 1.07e4
  • 1.17e4
  • 1.18e4
  • 1.20e4
  • 1.23e4
  • 1.23e4
65.37
  • 65.37
  • 64.27
  • 64.27
  • 60.70
  • 60.50
  • 59.98
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.17e4
63.32
  • 63.32
  • 63.32
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
1.16e4
  • 1.16e4
  • 1.16e4
  • 1.18e4
  • 1.25e4
61.09
  • 61.09
  • 61.09
  • 60.50
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
1.16e4
  • 1.16e4
  • 1.16e4
  • 1.16e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
61.09
  • 61.09
  • 61.09
  • 61.09
  • 58.80
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.17e4
  • 1.17e4
  • 1.25e4
  • 1.28e4
60.84
  • 60.84
  • 58.29
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
1.18e4
  • 1.18e4
  • 1.26e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
  • 1.31e4
60.50
  • 60.50
  • 57.87
  • 57.13
  • 56.65
  • 56.65
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.33
  • 60.33
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.26e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
57.87
  • 57.87
  • 57.87
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
1.26e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
57.68
  • 57.68
  • 57.68
  • 57.68
  • 57.68
  • 57.68
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCU469530, CU571330
EnsemblENSDARG00000055900 (zswim5)
Uniprot/SPTREMBLB8JLP8, B8JLP8_DANRE
ZFINZDB-GENE-030925-30 (zswim5)

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