D. rerio Gene: hoxb13a - ENSDARG00000056015 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056015
Namehoxb13a
Descriptionhomeobox B13a [Source:ZFIN;Acc:ZDB-GENE-050812-1]
OrganismDanio rerio (zebrafish)
Synonym(s)q4pr98, zgc:136601

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.93e3
  • 7.93e3
73.47
  • 73.47
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.71e3
  • 9.71e3
  • 1.29e4
67.49
  • 67.49
  • 56.76
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.08e4
  • 1.08e4
  • 1.28e4
  • 1.35e4
  • 1.39e4
  • 1.47e4
63.83
  • 63.83
  • 57.20
  • 54.92
  • 53.43
  • 50.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.21
  • 58.21
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.69e4
  • 1.69e4
43.42
  • 43.42
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.46
  • 35.46
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
28.85
  • 28.85
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.03
  • 27.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBC117625, DQ060545
EnsemblENSDARG00000056015 (hoxb13a)
Uniprot/SWISSPROTHXBDA_DANRE, Q1ECY2
ZFINZDB-GENE-050812-1 (hoxb13a)

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