D. rerio Gene: hoxb9a - ENSDARG00000056023 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056023
Namehoxb9a
Descriptionhomeobox B9a [Source:ZFIN;Acc:ZDB-GENE-990415-109]
OrganismDanio rerio (zebrafish)
Synonym(s)bz-23, bz23, hoxb9, o57364, q4pr99, q4v9d1, q5xji9, q6tnt7, wu:fc06b03

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
883
  • 883
97.05
  • 97.05
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.04e3
  • 1.04e3
96.51
  • 96.51
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.12e3
  • 1.12e3
96.26
  • 96.26
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.37e3
  • 1.37e3
95.42
  • 95.42
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
2.94e3
  • 2.94e3
  • 3.27e3
  • 3.46e3
  • 3.52e3
  • 3.80e3
  • 4.52e3
  • 5.29e3
  • 5.32e3
  • 8.51e3
  • 9.12e3
90.16
  • 90.16
  • 89.06
  • 88.41
  • 88.21
  • 87.26
  • 84.88
  • 82.28
  • 82.20
  • 71.52
  • 69.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000104life cycle
3.72e3
  • 3.72e3
  • 4.65e3
  • 4.82e3
  • 4.93e3
  • 4.98e3
  • 5.14e3
  • 7.19e3
  • 9.08e3
  • 9.42e3
  • 9.72e3
  • 1.04e4
  • 1.06e4
  • 1.16e4
  • 1.47e4
87.55
  • 87.55
  • 84.43
  • 83.87
  • 83.49
  • 83.33
  • 82.80
  • 75.92
  • 69.59
  • 68.46
  • 67.45
  • 65.11
  • 64.40
  • 61.10
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
4.02e3
  • 4.02e3
  • 9.25e3
  • 1.30e4
  • 1.75e4
86.54
  • 86.54
  • 69.03
  • 56.53
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.97e3
  • 5.97e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.68e3
  • 6.68e3
77.63
  • 77.63
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.20e3
  • 7.20e3
  • 1.38e4
75.90
  • 75.90
  • 53.63
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.07e3
  • 8.07e3
  • 8.39e3
  • 9.54e3
72.98
  • 72.98
  • 71.92
  • 68.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.82e3
  • 8.82e3
70.48
  • 70.48
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.11e3
  • 9.11e3
69.50
  • 69.50
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.98e3
  • 9.98e3
66.59
  • 66.59
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
64.03
  • 64.03
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.38
  • 62.38
AEIR
  • AEIR
CL:0000402CNS interneuron
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.12
  • 49.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAF071256, AY391430, BC083312, BC096950, DQ060544, Y14529
EnsemblENSDARG00000056023 (hoxb9a)
Uniprot/SPTREMBLH7BWW5, H7BWW5_DANRE
Uniprot/SWISSPROTHXB9A_DANRE, Q9PWM2
ZFINZDB-GENE-990415-109 (hoxb9a)

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