D. rerio Gene: tmem55a - ENSDARG00000056034 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056034
Nametmem55a
Descriptiontransmembrane protein 55A [Source:ZFIN;Acc:ZDB-GENE-060503-854]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-134n17.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.35e3
  • 5.35e3
82.10
  • 82.10
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.61e3
  • 5.61e3
81.22
  • 81.22
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.65e3
  • 6.65e3
77.73
  • 77.73
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.05e3
  • 7.05e3
  • 7.65e3
76.40
  • 76.40
  • 74.38
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
7.36e3
  • 7.36e3
  • 7.90e3
  • 8.84e3
  • 9.02e3
  • 9.45e3
75.37
  • 75.37
  • 73.55
  • 70.41
  • 69.79
  • 68.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.53e3
  • 7.53e3
74.80
  • 74.80
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
7.97e3
  • 7.97e3
  • 1.12e4
73.33
  • 73.33
  • 62.60
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.17e3
  • 9.17e3
69.30
  • 69.30
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.87e3
  • 9.87e3
66.96
  • 66.96
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.75
  • 61.75
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
  • 1.31e4
61.08
  • 61.08
  • 56.17
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.91
  • 60.91
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.89
  • 60.89
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.17e4
  • 1.17e4
60.74
  • 60.74
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.21e4
  • 1.21e4
59.44
  • 59.44
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.25
  • 54.25
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.41e4
  • 1.41e4
  • 1.51e4
52.91
  • 52.91
  • 49.59
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.75
  • 47.75
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
45.96
  • 45.96
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.78
  • 45.78
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.54
  • 45.54
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.39
  • 44.39
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.24
  • 42.24
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.74
  • 33.74
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBX005064, BX572629
EnsemblENSDARG00000056034 (tmem55a)
Uniprot/SPTREMBLQ1LWC3, Q1LWC3_DANRE
ZFINZDB-GENE-060503-854 (tmem55a)

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