D. rerio Gene: rangap1b - ENSDARG00000056059 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056059
Namerangap1b
DescriptionRan GTPase activating protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1921]
OrganismDanio rerio (zebrafish)
Synonym(s)rangap1, rangap1 {eco:0000313|embl:aai55268.1,gn eco:0000313|zfin:zdb-gene-040426-1921}, wu:fj57h07, zgc:66165
Orthologs(s)6 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.89e3
  • 1.89e3
93.69
  • 93.69
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.27e3
  • 2.27e3
  • 1.50e4
92.39
  • 92.39
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.34e3
  • 2.34e3
  • 2.48e3
  • 2.54e3
  • 2.77e3
  • 2.98e3
  • 3.63e3
  • 4.04e3
  • 4.29e3
  • 6.13e3
  • 7.42e3
  • 9.00e3
  • 9.95e3
  • 1.14e4
  • 1.17e4
  • 1.35e4
  • 1.39e4
  • 1.50e4
92.16
  • 92.16
  • 91.70
  • 91.50
  • 90.73
  • 90.03
  • 87.86
  • 86.47
  • 85.65
  • 79.47
  • 75.17
  • 69.88
  • 66.68
  • 61.75
  • 60.85
  • 54.65
  • 53.30
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
2.36e3
  • 2.36e3
  • 2.81e3
  • 2.93e3
  • 3.19e3
  • 3.31e3
  • 6.83e3
92.09
  • 92.09
  • 90.59
  • 90.19
  • 89.32
  • 88.93
  • 77.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.47e3
  • 2.47e3
  • 4.02e3
  • 7.23e3
  • 7.64e3
91.74
  • 91.74
  • 86.56
  • 75.78
  • 74.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
2.56e3
  • 2.56e3
  • 2.59e3
  • 3.42e3
  • 3.50e3
  • 3.61e3
  • 5.18e3
  • 6.52e3
  • 6.96e3
  • 7.33e3
  • 1.04e4
91.42
  • 91.42
  • 91.33
  • 88.54
  • 88.28
  • 87.90
  • 82.66
  • 78.15
  • 76.70
  • 75.46
  • 65.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.58e3
  • 2.58e3
91.36
  • 91.36
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
90.41
  • 90.41
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.50e3
  • 3.50e3
88.30
  • 88.30
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
3.59e3
  • 3.59e3
  • 4.12e3
  • 6.33e3
  • 6.41e3
  • 6.70e3
87.99
  • 87.99
  • 86.22
  • 78.79
  • 78.55
  • 77.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.47e3
  • 4.47e3
85.02
  • 85.02
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.91e3
  • 4.91e3
83.56
  • 83.56
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
  • 1.02e4
83.19
  • 83.19
  • 65.98
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.55e3
  • 5.55e3
81.41
  • 81.41
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.57e3
  • 5.57e3
81.34
  • 81.34
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.05e3
  • 6.05e3
79.73
  • 79.73
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.40e3
  • 6.40e3
78.58
  • 78.58
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.66e3
  • 6.66e3
77.69
  • 77.69
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.90e3
  • 6.90e3
76.91
  • 76.91
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.92e3
  • 6.92e3
76.82
  • 76.82
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.13e3
  • 7.13e3
  • 9.91e3
76.14
  • 76.14
  • 66.84
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.31e3
  • 7.31e3
75.54
  • 75.54
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.73e3
  • 7.73e3
  • 1.18e4
74.13
  • 74.13
  • 60.49
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.76e3
  • 7.76e3
  • 1.08e4
  • 1.10e4
74.01
  • 74.01
  • 63.79
  • 63.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.97e3
  • 7.97e3
73.31
  • 73.31
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.01e3
  • 8.01e3
73.19
  • 73.19
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.27e3
  • 9.27e3
68.97
  • 68.97
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.03
  • 66.03
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.58
  • 65.58
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.06e4
  • 1.06e4
  • 1.16e4
64.60
  • 64.60
  • 61.26
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.45
  • 64.45
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.82
  • 59.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria5 species6 genesCompare expression

Orthology information comes from OMA : ENSDARG00000056059.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000056059.

Cross-references

EnsemblENSDARG00000056059 (rangap1b)
ZFINZDB-GENE-040426-1921 (rangap1b)
EMBLBC155267, CR450737
Uniprot/SPTREMBLA9JTA8, A9JTA8_DANRE, E9QDW5, E9QDW5_DANRE

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