D. rerio Gene: RAP1GDS1 (1 to many) - ENSDARG00000056080 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056080
NameRAP1GDS1 (1 to many)
Descriptionsi:dkey-191g9.5 [Source:ZFIN;Acc:ZDB-GENE-090313-217]
OrganismDanio rerio (zebrafish)
Synonym(s)smggds
Orthologs(s)3 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.19e3
  • 1.19e3
96.01
  • 96.01
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
5.47e3
  • 5.47e3
  • 1.72e4
  • 2.06e4
  • 2.08e4
  • 2.12e4
81.70
  • 81.70
  • 42.54
  • 30.96
  • 30.23
  • 29.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.97e3
  • 5.97e3
  • 9.15e3
80.01
  • 80.01
  • 69.35
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.42e3
  • 6.42e3
78.51
  • 78.51
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.99e3
  • 7.99e3
73.24
  • 73.24
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.99e3
  • 9.99e3
66.55
  • 66.55
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.05e4
  • 1.05e4
  • 1.12e4
64.76
  • 64.76
  • 62.58
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.12e4
  • 1.12e4
62.65
  • 62.65
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.31e4
  • 1.31e4
  • 2.11e4
56.08
  • 56.08
  • 29.19
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.62
  • 52.62
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.46e4
  • 1.46e4
51.04
  • 51.04
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.17
  • 47.17
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.19
  • 45.19
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
44.99
  • 44.99
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.87
  • 39.87
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
36.97
  • 36.97
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.58
  • 30.58
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.59
  • 28.59
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.47e4
  • 2.47e4
17.43
  • 17.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi3 species3 genesCompare expression

Orthology information comes from OMA : ENSDARG00000056080.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000056080.

Cross-references

EnsemblENSDARG00000056080 (RAP1GDS1 (1 to many))
HGNCHGNC:9859 (RAP1GDS1 (1 to many))
ZFINZDB-GENE-090313-217 (si:dkey-191g9.5)
EMBLCT573233
Uniprot/SPTREMBLB8JK90, B8JK90_DANRE

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