D. rerio Gene: ndufa4 - ENSDARG00000056108 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056108
Namendufa4
DescriptionNADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1962]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:73405
Orthologs(s)30 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
242
  • 242
  • 285
  • 1.20e4
  • 1.26e4
99.19
  • 99.19
  • 99.05
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
361
  • 361
98.79
  • 98.79
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000039Larval:Days 7-13
434
  • 434
  • 1.08e4
  • 1.49e4
98.55
  • 98.55
  • 63.76
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
576
  • 576
98.08
  • 98.08
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
810
  • 810
  • 1.69e3
97.29
  • 97.29
  • 94.34
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
1.03e3
  • 1.03e3
  • 2.19e3
  • 2.54e3
  • 5.03e3
  • 5.49e3
  • 5.66e3
  • 1.34e4
  • 1.78e4
96.55
  • 96.55
  • 92.65
  • 91.48
  • 83.14
  • 81.63
  • 81.06
  • 55.14
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.27e3
  • 1.27e3
95.76
  • 95.76
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
2.40e3
  • 2.40e3
  • 3.23e3
  • 4.24e3
91.98
  • 91.98
  • 89.18
  • 85.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.70e3
  • 2.70e3
90.96
  • 90.96
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.03e3
  • 4.03e3
86.50
  • 86.50
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.12e3
  • 4.12e3
86.22
  • 86.22
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
4.82e3
  • 4.82e3
  • 5.66e3
  • 7.39e3
  • 8.53e3
  • 1.14e4
  • 1.24e4
  • 1.41e4
  • 1.57e4
  • 1.78e4
  • 1.78e4
83.85
  • 83.85
  • 81.05
  • 75.25
  • 71.45
  • 61.73
  • 58.63
  • 52.82
  • 47.34
  • 40.56
  • 40.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
6.84e3
  • 6.84e3
  • 1.09e4
  • 1.16e4
  • 1.20e4
  • 1.65e4
77.10
  • 77.10
  • 63.50
  • 61.03
  • 59.98
  • 44.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.23e3
  • 7.23e3
75.80
  • 75.80
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.57e3
  • 7.57e3
74.64
  • 74.64
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.33e3
  • 8.33e3
72.10
  • 72.10
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 1.12e4
69.99
  • 69.99
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
69.74
  • 69.74
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
67.34
  • 67.34
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.87e3
  • 9.87e3
66.94
  • 66.94
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.96e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
66.65
  • 66.65
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
1.03e4
  • 1.03e4
  • 1.07e4
  • 1.17e4
  • 1.20e4
  • 1.31e4
65.37
  • 65.37
  • 64.27
  • 60.70
  • 59.98
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.04e4
  • 1.04e4
  • 1.12e4
  • 1.12e4
65.19
  • 65.19
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.07e4
  • 1.07e4
64.98
  • 64.98
  • 64.26
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.10e4
  • 1.41e4
64.98
  • 64.98
  • 64.98
  • 63.14
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.05e4
  • 1.05e4
  • 1.08e4
  • 1.08e4
64.98
  • 64.98
  • 63.87
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.05e4
64.69
  • 64.69
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
  • 1.10e4
64.27
  • 64.27
  • 63.32
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.07e4
  • 1.07e4
  • 1.12e4
  • 1.12e4
64.26
  • 64.26
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000039Larval:Days 7-13
1.08e4
  • 1.08e4
  • 1.14e4
  • 1.20e4
  • 1.49e4
63.87
  • 63.87
  • 61.88
  • 59.98
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.09e4
  • 1.09e4
  • 1.09e4
  • 1.20e4
  • 1.21e4
63.63
  • 63.63
  • 63.63
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.49e4
62.49
  • 62.49
  • 60.70
  • 60.70
  • 60.70
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
62.48
  • 62.48
  • 62.48
  • 61.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.18e4
60.50
  • 60.50
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:2001076intestinal bulb
  • ZFS:0000037Larval:Day 5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.24e4
  • 1.24e4
58.63
  • 58.63
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.25e4
  • 1.25e4
  • 1.27e4
58.31
  • 58.31
  • 57.47
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.88
  • 57.88
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.32
  • 56.32
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.93
  • 51.93
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.44e4
  • 1.44e4
  • 1.65e4
  • 1.75e4
51.85
  • 51.85
  • 44.72
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.77e4
  • 1.77e4
40.60
  • 40.60
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.85e4
  • 1.85e4
38.12
  • 38.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species24 genesCompare expression
Bilateria22 species30 genesCompare expression

Orthology information comes from OMA : ENSDARG00000056108.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000056108.

Cross-references

EnsemblENSDARG00000056108 (ndufa4)
ZFINZDB-GENE-040426-1962 (ndufa4)
EMBLBC059706
Uniprot/SWISSPROTNDUA4_DANRE, Q6PBH5

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