D. rerio Gene: neurog1 - ENSDARG00000056130 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056130
Nameneurog1
Descriptionneurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
OrganismDanio rerio (zebrafish)
Synonym(s)cb260, chunp6899, neurod3, neurogenic differentiation 3, neurogenin, neurogenin1, ngn1, ngr1, zath4c, zngn1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
996
  • 996
  • 3.20e3
  • 3.32e3
  • 4.98e3
  • 5.75e3
  • 5.75e3
  • 7.91e3
  • 8.79e3
  • 1.49e4
96.67
  • 96.67
  • 89.28
  • 88.89
  • 83.33
  • 80.76
  • 80.76
  • 73.52
  • 70.57
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.07e3
  • 1.07e3
  • 2.30e3
  • 2.30e3
96.43
  • 96.43
  • 92.31
  • 92.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000022Gastrula:Bud
1.15e3
  • 1.15e3
  • 2.13e3
  • 3.93e3
  • 4.98e3
  • 4.98e3
  • 5.34e3
  • 6.40e3
  • 6.97e3
  • 8.79e3
  • 8.79e3
  • 1.49e4
96.16
  • 96.16
  • 92.86
  • 86.84
  • 83.34
  • 83.34
  • 82.14
  • 78.56
  • 76.66
  • 70.57
  • 70.57
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000530primary neuron
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
1.24e3
  • 1.24e3
  • 3.73e3
  • 3.73e3
  • 4.98e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 8.96e3
  • 8.96e3
  • 1.49e4
95.84
  • 95.84
  • 87.50
  • 87.50
  • 83.34
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 70.00
  • 70.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.24e3
  • 1.24e3
  • 3.73e3
  • 4.60e3
95.84
  • 95.84
  • 87.50
  • 84.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
1.24e3
  • 1.24e3
  • 3.73e3
  • 3.73e3
  • 1.49e4
95.84
  • 95.84
  • 87.50
  • 87.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
1.49e3
  • 1.49e3
  • 3.20e3
  • 3.93e3
  • 5.20e3
  • 5.23e3
  • 6.72e3
  • 7.47e3
  • 8.96e3
  • 9.25e3
95.00
  • 95.00
  • 89.28
  • 86.84
  • 82.60
  • 82.49
  • 77.49
  • 75.00
  • 69.98
  • 69.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.87e3
  • 1.87e3
  • 2.13e3
  • 7.47e3
  • 8.15e3
  • 8.30e3
  • 8.30e3
  • 1.09e4
  • 1.09e4
93.75
  • 93.75
  • 92.86
  • 74.99
  • 72.72
  • 72.22
  • 72.22
  • 63.63
  • 63.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.12e3
  • 2.12e3
92.92
  • 92.92
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000034Hatching:Pec-fin
2.13e3
  • 2.13e3
  • 2.13e3
  • 2.13e3
  • 5.60e3
  • 6.40e3
  • 7.47e3
  • 8.71e3
  • 8.96e3
  • 8.96e3
  • 1.49e4
92.86
  • 92.86
  • 92.86
  • 92.86
  • 81.24
  • 78.56
  • 74.99
  • 70.82
  • 69.99
  • 69.99
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
2.36e3
  • 2.36e3
  • 2.64e3
  • 6.64e3
  • 7.47e3
  • 9.25e3
  • 9.44e3
  • 9.44e3
92.10
  • 92.10
  • 91.17
  • 77.77
  • 74.99
  • 69.03
  • 68.40
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000821primary neuron hindbrain (Danio)
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
2.49e3
  • 2.49e3
  • 3.73e3
  • 3.73e3
91.67
  • 91.67
  • 87.50
  • 87.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
2.49e3
  • 2.49e3
  • 4.36e3
  • 4.39e3
  • 6.64e3
  • 7.15e3
  • 7.15e3
  • 7.47e3
  • 9.44e3
91.67
  • 91.67
  • 85.41
  • 85.29
  • 77.77
  • 76.07
  • 76.07
  • 74.98
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
2.58e3
  • 2.58e3
  • 3.69e3
  • 3.72e3
  • 5.61e3
  • 6.55e3
  • 6.66e3
  • 8.84e3
  • 9.03e3
  • 1.19e4
  • 1.48e4
91.38
  • 91.38
  • 87.64
  • 87.53
  • 81.21
  • 78.08
  • 77.69
  • 70.41
  • 69.77
  • 60.25
  • 50.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
2.80e3
  • 2.80e3
  • 3.73e3
  • 6.64e3
  • 7.03e3
  • 8.40e3
  • 9.67e3
  • 9.67e3
90.62
  • 90.62
  • 87.50
  • 77.77
  • 76.46
  • 71.86
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000533primary motor neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
2.99e3
  • 2.99e3
  • 4.98e3
  • 9.96e3
  • 1.49e4
90.00
  • 90.00
  • 83.34
  • 66.66
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007296presumptive rhombomere 2
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
2.99e3
  • 2.99e3
  • 1.49e4
90.00
  • 90.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
2.99e3
  • 2.99e3
  • 3.20e3
  • 4.98e3
  • 6.64e3
  • 6.72e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 8.40e3
90.00
  • 90.00
  • 89.28
  • 83.32
  • 77.77
  • 77.49
  • 76.46
  • 75.00
  • 74.99
  • 71.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.99e3
  • 2.99e3
  • 1.12e4
  • 1.17e4
90.00
  • 90.00
  • 62.51
  • 60.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000035Larval:Protruding-mouth
3.15e3
  • 3.15e3
  • 3.52e3
  • 5.87e3
  • 7.47e3
  • 8.15e3
  • 9.71e3
  • 9.71e3
  • 1.34e4
89.47
  • 89.47
  • 88.23
  • 80.34
  • 74.98
  • 72.71
  • 67.48
  • 67.48
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
3.20e3
  • 3.20e3
  • 3.45e3
  • 3.45e3
89.28
  • 89.28
  • 88.46
  • 88.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
3.32e3
  • 3.32e3
  • 4.48e3
  • 6.79e3
  • 9.33e3
  • 9.96e3
88.89
  • 88.89
  • 85.00
  • 77.27
  • 68.74
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
3.56e3
  • 3.56e3
  • 4.72e3
  • 6.29e3
  • 6.89e3
  • 6.89e3
  • 6.97e3
  • 8.04e3
  • 8.04e3
  • 8.04e3
88.09
  • 88.09
  • 84.20
  • 78.94
  • 76.92
  • 76.92
  • 76.66
  • 73.07
  • 73.07
  • 73.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000031neuroblast
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000023Segmentation:1-4 somites
3.73e3
  • 3.73e3
  • 7.47e3
  • 1.49e4
87.50
  • 87.50
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
3.73e3
  • 3.73e3
  • 4.15e3
  • 6.23e3
  • 6.29e3
  • 7.08e3
  • 7.86e3
  • 7.86e3
  • 9.13e3
87.50
  • 87.50
  • 86.11
  • 79.15
  • 78.94
  • 76.30
  • 73.67
  • 73.67
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
3.74e3
  • 3.74e3
  • 4.48e3
  • 6.40e3
  • 8.83e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
87.49
  • 87.49
  • 84.99
  • 78.57
  • 70.44
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
4.17e3
  • 4.17e3
  • 1.27e4
  • 1.30e4
  • 1.44e4
  • 1.75e4
  • 1.96e4
86.03
  • 86.03
  • 57.35
  • 56.56
  • 51.69
  • 41.42
  • 34.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
4.27e3
  • 4.27e3
  • 4.98e3
  • 6.54e3
  • 7.47e3
  • 8.15e3
  • 8.40e3
  • 1.05e4
  • 1.05e4
  • 1.38e4
85.71
  • 85.71
  • 83.33
  • 78.12
  • 75.00
  • 72.71
  • 71.86
  • 64.98
  • 64.98
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
4.27e3
  • 4.27e3
  • 4.60e3
  • 4.98e3
85.71
  • 85.71
  • 84.61
  • 83.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
4.48e3
  • 4.48e3
  • 4.98e3
  • 5.97e3
  • 6.22e3
  • 6.22e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 7.47e3
  • 9.33e3
85.00
  • 85.00
  • 83.33
  • 80.00
  • 79.16
  • 79.16
  • 77.27
  • 77.27
  • 77.27
  • 74.99
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
4.98e3
  • 4.98e3
  • 6.40e3
  • 1.49e4
83.34
  • 83.34
  • 78.56
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 7.47e3
  • 8.96e3
83.34
  • 83.34
  • 75.00
  • 70.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000068proneural cluster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
4.98e3
  • 4.98e3
  • 4.98e3
  • 5.97e3
83.33
  • 83.33
  • 83.33
  • 80.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000098proliferative region
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
83.33
  • 83.33
  • 83.33
  • 83.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002827vestibulocochlear ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
5.97e3
  • 5.97e3
  • 9.96e3
  • 1.49e4
80.00
  • 80.00
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
6.03e3
  • 6.03e3
  • 6.64e3
  • 6.84e3
  • 7.52e3
  • 7.54e3
  • 8.00e3
  • 9.06e3
  • 1.19e4
  • 1.43e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
  • 1.58e4
  • 1.60e4
  • 1.66e4
79.80
  • 79.80
  • 77.77
  • 77.09
  • 74.82
  • 74.77
  • 73.22
  • 69.65
  • 60.28
  • 52.03
  • 49.95
  • 49.92
  • 49.80
  • 47.17
  • 46.53
  • 44.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000025Segmentation:10-13 somites
6.79e3
  • 6.79e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 8.30e3
  • 8.30e3
  • 1.49e4
77.27
  • 77.27
  • 74.99
  • 74.99
  • 74.99
  • 72.22
  • 72.22
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000534primary interneuron
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
  • 1.00e4
  • 1.12e4
  • 2.45e4
75.00
  • 75.00
  • 66.52
  • 62.50
  • 17.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000044dorsal root ganglion
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001700geniculate ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.12e4
  • 1.49e4
75.00
  • 75.00
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001701glossopharyngeal ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.12e4
  • 1.49e4
75.00
  • 75.00
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005362vagus X ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001312dorsal anterior lateral line ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003078epibranchial placode
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0007291presumptive rhombomere 4
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0006238future brain
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 8.30e3
  • 8.30e3
74.99
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 72.22
  • 72.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
7.80e3
  • 7.80e3
  • 8.22e3
  • 8.96e3
  • 9.71e3
73.90
  • 73.90
  • 72.48
  • 69.98
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
7.92e3
  • 7.92e3
  • 8.15e3
  • 1.31e4
  • 1.34e4
  • 1.36e4
  • 1.49e4
  • 1.49e4
  • 1.80e4
73.47
  • 73.47
  • 72.72
  • 56.24
  • 54.99
  • 54.53
  • 50.00
  • 49.99
  • 39.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.44e3
  • 9.44e3
69.98
  • 69.98
  • 68.40
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
9.67e3
  • 9.67e3
  • 9.67e3
  • 9.67e3
  • 1.49e4
67.63
  • 67.63
  • 67.63
  • 67.63
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.12e4
  • 1.49e4
  • 1.49e4
66.67
  • 66.67
  • 62.50
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001302vagal ganglion 1
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:2001303vagal ganglion 2
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.01e4
  • 1.01e4
66.04
  • 66.04
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.20
  • 65.20
AEIR
  • AEIR
CL:0000247Rohon-Beard neuron
  • ZFS:0000023Segmentation:1-4 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0003098optic stalk
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
  • 1.19e4
  • 1.33e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 60.00
  • 55.55
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001304vagal ganglion 3
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:2001305vagal ganglion 4
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.18e4
  • 1.18e4
  • 1.27e4
  • 1.70e4
60.51
  • 60.51
  • 57.55
  • 43.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.18e4
  • 1.18e4
60.50
  • 60.50
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
1.26e4
  • 1.26e4
57.87
  • 57.87
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
  • 1.49e4
57.14
  • 57.14
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.31e4
  • 1.31e4
  • 1.36e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
56.23
  • 56.23
  • 54.53
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000025Segmentation:10-13 somites
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.44e4
  • 1.44e4
51.84
  • 51.84
AEIR
  • AEIR
CL:0000047neuronal stem cell
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000020Gastrula:75%-epiboly
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009125petrosal placode
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0009955neurogenic placode
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0014777spinal neuromere
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001297vagal placode 1
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001298vagal placode 2
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001299vagal placode 3
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001300vagal placode 4
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001313ventral anterior lateral line ganglion
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2001316anterior lateral line placode
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000034Hatching:Pec-fin
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003249epithelium of otic placode
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0009124geniculate placode
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001156posterior lateral line placode
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007043hindbrain neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.16
  • 48.16
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.80
  • 45.80
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.41
  • 43.41
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.26
  • 41.26
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.24
  • 41.24
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.13
  • 40.13
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.27
  • 35.27
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.58e4
  • 2.58e4
13.74
  • 13.74
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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