D. rerio Gene: fam3c - ENSDARG00000056152 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056152
Namefam3c
Descriptionfamily with sequence similarity 3, member C [Source:ZFIN;Acc:ZDB-GENE-030131-6137]
OrganismDanio rerio (zebrafish)
Synonym(s)q6ny75, wu:fb99h11, wu:fi35h03, zgc:55444, zgc:77090
Orthologs(s)19 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
1.25e3
  • 1.25e3
  • 1.37e3
  • 1.70e3
  • 3.08e3
  • 3.24e3
  • 3.39e3
95.83
  • 95.83
  • 95.41
  • 94.30
  • 89.70
  • 89.16
  • 88.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.26e3
  • 1.26e3
  • 3.27e3
95.78
  • 95.78
  • 89.05
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.30e3
  • 1.30e3
95.65
  • 95.65
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
1.34e3
  • 1.34e3
  • 1.80e3
  • 2.87e3
  • 2.99e3
  • 3.33e3
95.51
  • 95.51
  • 93.97
  • 90.41
  • 89.99
  • 88.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.39e3
  • 1.39e3
95.35
  • 95.35
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000109gastrula stage
2.03e3
  • 2.03e3
  • 2.12e3
  • 2.23e3
  • 2.49e3
  • 3.00e3
  • 3.88e3
  • 4.17e3
  • 4.98e3
  • 5.97e3
  • 6.22e3
  • 6.80e3
  • 6.87e3
  • 6.97e3
  • 8.61e3
  • 8.63e3
  • 8.63e3
  • 1.05e4
  • 1.17e4
  • 1.39e4
  • 1.47e4
  • 1.49e4
  • 1.49e4
93.21
  • 93.21
  • 92.89
  • 92.52
  • 91.68
  • 89.95
  • 87.03
  • 86.02
  • 83.33
  • 80.00
  • 79.16
  • 77.22
  • 77.01
  • 76.66
  • 71.18
  • 71.12
  • 71.12
  • 64.77
  • 60.88
  • 53.44
  • 50.90
  • 50.25
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
93.01
  • 93.01
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.24e3
  • 2.24e3
92.51
  • 92.51
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
2.62e3
  • 2.62e3
  • 2.74e3
  • 3.36e3
  • 3.93e3
  • 4.16e3
  • 4.35e3
  • 4.45e3
  • 4.67e3
  • 5.84e3
  • 7.92e3
91.23
  • 91.23
  • 90.82
  • 88.74
  • 86.85
  • 86.08
  • 85.43
  • 85.09
  • 84.38
  • 80.46
  • 73.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.70e3
  • 2.70e3
90.95
  • 90.95
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.80e3
  • 2.80e3
90.63
  • 90.63
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
3.21e3
  • 3.21e3
  • 1.29e4
89.24
  • 89.24
  • 56.86
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.44e3
  • 3.44e3
88.50
  • 88.50
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.81e3
  • 3.81e3
87.23
  • 87.23
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.04e3
  • 4.04e3
86.47
  • 86.47
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.56e3
  • 4.56e3
  • 9.37e3
84.74
  • 84.74
  • 68.62
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
4.82e3
  • 4.82e3
  • 6.83e3
83.86
  • 83.86
  • 77.14
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.82e3
  • 4.82e3
83.85
  • 83.85
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.89e3
  • 4.89e3
83.62
  • 83.62
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.95e3
  • 4.95e3
83.43
  • 83.43
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.95e3
  • 4.95e3
83.42
  • 83.42
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.20e3
  • 5.20e3
82.59
  • 82.59
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.04e3
  • 6.04e3
79.79
  • 79.79
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.10e3
  • 6.10e3
  • 9.30e3
79.58
  • 79.58
  • 68.86
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.53e3
  • 6.53e3
78.14
  • 78.14
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
77.82
  • 77.82
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
6.79e3
  • 6.79e3
  • 7.69e3
  • 8.31e3
77.28
  • 77.28
  • 74.26
  • 72.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.15e3
  • 7.15e3
  • 8.33e3
  • 1.00e4
76.05
  • 76.05
  • 72.09
  • 66.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.42e3
  • 7.42e3
75.15
  • 75.15
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.65e3
  • 8.65e3
71.05
  • 71.05
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.22
  • 66.22
AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.03e4
  • 1.03e4
  • 1.10e4
  • 1.10e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
65.61
  • 65.61
  • 63.32
  • 63.32
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
  • 1.20e4
  • 1.22e4
  • 1.22e4
59.98
  • 59.98
  • 59.97
  • 59.06
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007383enveloping layer of ectoderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.22e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.34e4
  • 1.34e4
  • 1.34e4
59.08
  • 59.08
  • 59.08
  • 58.32
  • 54.99
  • 54.99
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
1.24e4
  • 1.24e4
  • 1.26e4
  • 1.26e4
  • 1.36e4
  • 1.36e4
  • 1.36e4
58.32
  • 58.32
  • 57.68
  • 57.68
  • 54.53
  • 54.53
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000056152.

Cross-references

EnsemblENSDARG00000056152 (fam3c)
ZFINZDB-GENE-030131-6137 (fam3c)
EMBLBC044170, BC066710, BC165154, BX890616
Uniprot/SPTREMBLB2GRJ9, B2GRJ9_DANRE
Uniprot/SWISSPROTFAM3C_DANRE, Q7ZYY4

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