D. rerio Gene: pld1a - ENSDARG00000056228 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056228
Namepld1a
Descriptionphospholipase D1a [Source:ZFIN;Acc:ZDB-GENE-031002-2]
OrganismDanio rerio (zebrafish)
Synonym(s)pld1, si:ch211-244m8.2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.57e3
  • 2.57e3
91.40
  • 91.40
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
3.68e3
  • 3.68e3
  • 1.28e4
  • 1.31e4
87.69
  • 87.69
  • 57.13
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.05e3
  • 4.05e3
86.46
  • 86.46
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.61e3
  • 5.61e3
  • 8.21e3
81.22
  • 81.22
  • 72.50
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.31e3
  • 6.31e3
78.86
  • 78.86
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.16e3
  • 7.16e3
76.04
  • 76.04
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.34e3
  • 7.34e3
  • 1.81e4
75.41
  • 75.41
  • 39.32
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
7.47e3
  • 7.47e3
  • 8.96e3
  • 9.71e3
75.00
  • 75.00
  • 69.98
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000005Cleavage:16-cell
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.47e3
  • 7.47e3
  • 1.42e4
  • 1.50e4
74.99
  • 74.99
  • 52.43
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.71e3
  • 7.71e3
74.20
  • 74.20
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.75e3
  • 7.75e3
74.04
  • 74.04
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.83e3
  • 7.83e3
73.79
  • 73.79
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.45e3
  • 8.45e3
71.70
  • 71.70
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.52e3
  • 8.52e3
71.48
  • 71.48
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.85e3
  • 8.85e3
70.37
  • 70.37
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.97e3
  • 8.97e3
69.97
  • 69.97
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
69.75
  • 69.75
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
9.41e3
  • 9.41e3
  • 1.08e4
  • 1.11e4
  • 1.34e4
  • 1.34e4
68.49
  • 68.49
  • 63.87
  • 62.67
  • 55.07
  • 55.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.34
  • 66.34
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.04e4
  • 1.04e4
65.33
  • 65.33
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.07e4
  • 1.07e4
  • 1.21e4
64.11
  • 64.11
  • 59.37
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.12e4
  • 1.12e4
62.44
  • 62.44
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.29e4
  • 1.29e4
  • 1.31e4
  • 1.31e4
  • 1.34e4
  • 1.37e4
  • 1.39e4
56.79
  • 56.79
  • 56.24
  • 56.22
  • 54.97
  • 54.13
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
55.98
  • 55.98
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
1.32e4
  • 1.32e4
  • 1.32e4
  • 1.34e4
  • 1.36e4
55.97
  • 55.97
  • 55.86
  • 54.97
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.48
  • 50.48
AEIR
  • AEIR
UBERON:0004117pharyngeal pouch
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.01
  • 43.01
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.72e4
  • 1.72e4
42.56
  • 42.56
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.75e4
  • 1.75e4
41.53
  • 41.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCR848726
EnsemblENSDARG00000056228 (pld1a)
Uniprot/SPTREMBLB0V1J1, B0V1J1_DANRE
ZFINZDB-GENE-031002-2 (pld1a)

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