D. rerio Gene: sort1b - ENSDARG00000056252 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056252
Namesort1b
Descriptionsortilin 1b [Source:ZFIN;Acc:ZDB-GENE-030131-7447]
OrganismDanio rerio (zebrafish)
Synonym(s)sort1, sort1l, wu:fj17g07, wu:fj22b04

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.73e3
  • 1.73e3
94.22
  • 94.22
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.90e3
  • 1.90e3
93.63
  • 93.63
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.54e3
  • 2.54e3
  • 7.07e3
91.50
  • 91.50
  • 76.33
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.58e3
  • 2.58e3
  • 3.35e3
91.38
  • 91.38
  • 88.78
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.58e3
  • 2.58e3
91.37
  • 91.37
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
2.84e3
  • 2.84e3
  • 6.24e3
  • 8.20e3
  • 8.73e3
90.48
  • 90.48
  • 79.11
  • 72.55
  • 70.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.13e3
  • 3.13e3
89.54
  • 89.54
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
3.27e3
  • 3.27e3
  • 8.77e3
  • 1.45e4
89.04
  • 89.04
  • 70.65
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.72e3
  • 3.72e3
87.53
  • 87.53
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.12e3
  • 4.12e3
86.21
  • 86.21
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.19e3
  • 4.19e3
85.97
  • 85.97
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
4.29e3
  • 4.29e3
  • 4.81e3
  • 5.39e3
  • 5.53e3
  • 6.70e3
  • 8.73e3
85.64
  • 85.64
  • 83.88
  • 81.96
  • 81.49
  • 77.57
  • 70.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.57e3
  • 4.57e3
84.70
  • 84.70
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.17
  • 83.17
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
82.56
  • 82.56
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.78e3
  • 5.78e3
80.64
  • 80.64
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
6.07e3
  • 6.07e3
  • 6.37e3
  • 6.46e3
  • 6.66e3
  • 7.49e3
  • 8.60e3
  • 8.65e3
  • 8.83e3
  • 9.09e3
  • 9.16e3
  • 9.28e3
  • 9.75e3
  • 1.09e4
  • 1.33e4
  • 1.41e4
  • 1.42e4
  • 1.49e4
79.66
  • 79.66
  • 78.67
  • 78.38
  • 77.70
  • 74.91
  • 71.21
  • 71.03
  • 70.44
  • 69.58
  • 69.34
  • 68.94
  • 67.36
  • 63.46
  • 55.55
  • 52.86
  • 52.43
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
6.13e3
  • 6.13e3
  • 6.73e3
  • 6.96e3
  • 6.97e3
  • 7.07e3
  • 7.92e3
  • 9.57e3
  • 1.03e4
  • 1.10e4
  • 1.15e4
79.49
  • 79.49
  • 77.48
  • 76.70
  • 76.65
  • 76.33
  • 73.49
  • 67.95
  • 65.37
  • 63.26
  • 61.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.14e3
  • 6.14e3
79.46
  • 79.46
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.19e3
  • 7.19e3
75.92
  • 75.92
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.31e3
  • 7.31e3
  • 8.56e3
  • 8.70e3
75.53
  • 75.53
  • 71.35
  • 70.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.96e3
  • 7.96e3
  • 1.42e4
73.34
  • 73.34
  • 52.59
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.68e3
  • 8.68e3
70.93
  • 70.93
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.01e4
  • 1.01e4
66.18
  • 66.18
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.48
  • 63.48
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
1.22e4
  • 1.22e4
  • 1.25e4
  • 1.25e4
  • 1.66e4
59.09
  • 59.09
  • 58.10
  • 58.00
  • 44.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.06
  • 55.06
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.42e4
  • 1.42e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.44e4
  • 1.44e4
51.63
  • 51.63
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.59e4
  • 1.59e4
46.71
  • 46.71
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBX470135
EnsemblENSDARG00000056252 (sort1b)
Uniprot/SPTREMBLA5PMG8, A5PMG8_DANRE
ZFINZDB-GENE-030131-7447 (sort1b)

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