D. rerio Gene: ldb3a - ENSDARG00000056322 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056322
Nameldb3a
DescriptionLIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]
OrganismDanio rerio (zebrafish)
Synonym(s)cypher, hm:zehn1639, ldb3, zasp, zehn1639

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
167
  • 167
99.45
  • 99.45
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
170
  • 170
99.43
  • 99.43
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
300
  • 300
  • 379
  • 1.15e4
  • 1.26e4
  • 1.49e4
99.00
  • 99.00
  • 98.74
  • 61.51
  • 57.87
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
303
  • 303
98.99
  • 98.99
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
576
  • 576
98.07
  • 98.07
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
695
  • 695
  • 2.00e3
  • 2.15e3
  • 2.35e3
  • 5.27e3
  • 5.35e3
  • 8.87e3
  • 1.22e4
  • 1.37e4
  • 1.37e4
  • 1.38e4
  • 1.39e4
  • 1.43e4
  • 1.43e4
  • 1.50e4
97.68
  • 97.68
  • 93.32
  • 92.79
  • 92.14
  • 82.36
  • 82.08
  • 70.29
  • 59.08
  • 54.15
  • 54.06
  • 53.89
  • 53.57
  • 52.23
  • 51.99
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
744
  • 744
97.51
  • 97.51
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
839
  • 839
  • 915
  • 1.37e3
  • 1.87e3
  • 2.89e3
  • 6.04e3
  • 6.43e3
  • 1.38e4
  • 1.75e4
97.19
  • 97.19
  • 96.94
  • 95.42
  • 93.72
  • 90.33
  • 79.76
  • 78.48
  • 53.83
  • 41.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.04e3
  • 1.04e3
  • 1.51e3
  • 1.86e3
96.51
  • 96.51
  • 94.95
  • 93.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.28e3
  • 1.28e3
  • 1.19e4
95.72
  • 95.72
  • 60.15
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.59
  • 92.59
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.71
  • 91.71
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
5.97e3
  • 5.97e3
  • 1.28e4
80.00
  • 80.00
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.07e3
  • 6.07e3
79.69
  • 79.69
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.20e3
  • 6.20e3
  • 9.27e3
79.24
  • 79.24
  • 68.95
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
79.16
  • 79.16
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.86e3
  • 7.86e3
73.67
  • 73.67
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.89e3
  • 8.89e3
70.22
  • 70.22
AEIR
  • AEIR
UBERON:0001774skeletal muscle of trunk
  • ZFS:0000037Larval:Day 5
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.07e4
  • 1.07e4
  • 1.50e4
64.10
  • 64.10
  • 49.92
AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
1.08e4
  • 1.08e4
  • 1.12e4
  • 1.32e4
63.87
  • 63.87
  • 62.48
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.08e4
  • 1.08e4
  • 1.12e4
  • 1.12e4
  • 1.25e4
63.76
  • 63.76
  • 62.50
  • 62.49
  • 58.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 1.48e4
62.50
  • 62.50
  • 50.40
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.12e4
  • 1.12e4
  • 1.13e4
62.41
  • 62.41
  • 62.01
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.23e4
  • 1.27e4
  • 1.49e4
61.88
  • 61.88
  • 59.98
  • 58.80
  • 57.47
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.16e4
  • 1.16e4
  • 1.38e4
  • 1.75e4
61.23
  • 61.23
  • 53.96
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
1.16e4
  • 1.16e4
  • 1.18e4
  • 1.20e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
  • 1.49e4
61.09
  • 61.09
  • 60.50
  • 59.98
  • 59.98
  • 58.31
  • 58.31
  • 58.31
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008229craniocervical region musculature
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
1.19e4
  • 1.19e4
  • 1.34e4
  • 1.49e4
60.00
  • 60.00
  • 54.99
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
  • 1.49e4
  • 1.53e4
59.99
  • 59.99
  • 49.99
  • 48.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0005498primitive heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.41e4
  • 1.41e4
  • 1.42e4
52.75
  • 52.75
  • 52.47
AEIR
  • AEIR
  • AEIR
CL:0000207olfactory receptor cell
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.57e4
  • 1.57e4
47.53
  • 47.53
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.63e4
  • 1.63e4
45.48
  • 45.48
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.86
  • 42.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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