D. rerio Gene: zgc:123295 - ENSDARG00000056324 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056324
Namezgc:123295
Descriptionzgc:123295 [Source:ZFIN;Acc:ZDB-GENE-051127-11]
OrganismDanio rerio (zebrafish)
Paralog(s)64 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
885
  • 885
97.04
  • 97.04
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
93.09
  • 93.09
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
2.56e3
  • 2.56e3
  • 3.00e3
  • 3.83e3
  • 4.08e3
  • 4.85e3
  • 6.86e3
91.45
  • 91.45
  • 89.96
  • 87.17
  • 86.34
  • 83.77
  • 77.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000104life cycle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
5.48e3
  • 5.48e3
  • 5.64e3
  • 5.89e3
  • 7.96e3
  • 8.21e3
  • 1.08e4
  • 1.41e4
  • 1.42e4
  • 1.43e4
  • 1.45e4
  • 1.45e4
  • 1.46e4
  • 1.52e4
  • 1.52e4
  • 1.53e4
  • 1.60e4
81.65
  • 81.65
  • 81.11
  • 80.27
  • 73.35
  • 72.50
  • 63.93
  • 52.86
  • 52.60
  • 52.22
  • 51.56
  • 51.42
  • 51.16
  • 49.22
  • 49.05
  • 48.72
  • 46.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
6.98e3
  • 6.98e3
  • 7.04e3
  • 8.66e3
  • 9.42e3
  • 1.08e4
  • 1.09e4
  • 1.40e4
  • 1.48e4
  • 1.67e4
  • 1.91e4
76.64
  • 76.64
  • 76.43
  • 71.00
  • 68.45
  • 63.78
  • 63.52
  • 53.09
  • 50.35
  • 44.11
  • 35.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.45e3
  • 7.45e3
  • 2.07e4
75.06
  • 75.06
  • 30.53
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.48e3
  • 7.48e3
  • 1.05e4
74.95
  • 74.95
  • 64.74
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
64.00
  • 64.00
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.86
  • 63.86
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
1.10e4
  • 1.10e4
  • 1.22e4
63.24
  • 63.24
  • 59.25
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
  • 2.12e4
58.30
  • 58.30
  • 29.13
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
  • 1.38e4
  • 1.59e4
55.28
  • 55.28
  • 53.94
  • 46.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.45
  • 51.45
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.48
  • 50.48
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.52e4
  • 1.52e4
49.09
  • 49.09
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.05
  • 47.05
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
  • 1.95e4
36.93
  • 36.93
  • 34.71
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.18e4
  • 2.18e4
27.14
  • 27.14
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.73e4
  • 2.73e4
8.66
  • 8.66
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi5 genesCompare expression
Clupeocephala12 genesCompare expression
Opisthokonta64 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000056324.

Cross-references

EnsemblENSDARG00000056324 (zgc:123295)
ZFINZDB-GENE-051127-11 (zgc:123295)
EMBLCR387996
Uniprot/SPTREMBLF1QTV7, F1QTV7_DANRE

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