Gene: zgc:123295 - ENSDARG00000056324 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000056324
Name	zgc:123295
Description	zgc:123295 [Source:ZFIN;Acc:ZDB-GENE-051127-11]
Organism	Danio rerio (zebrafish)
Paralog(s)	64 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	885 885	97.04 97.04	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	2.07e3 2.07e3	93.09 93.09	AEIR AEIR
UBERON:0004734	gastrula	[+] 6 stages ZFS:0000022Gastrula:Bud ZFS:0000021Gastrula:90%-epiboly ZFS:0000019Gastrula:Shield ZFS:0000020Gastrula:75%-epiboly ZFS:0000017Gastrula:50%-epiboly UBERON:0000109gastrula stage	2.56e3 2.56e3 3.00e3 3.83e3 4.08e3 4.85e3 6.86e3	91.45 91.45 89.96 87.17 86.34 83.77 77.03	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 16 stages ZFS:0000022Gastrula:Bud ZFS:0000020Gastrula:75%-epiboly ZFS:0000021Gastrula:90%-epiboly ZFS:0000019Gastrula:Shield ZFS:0000024Segmentation:5-9 somites ZFS:0000026Segmentation:14-19 somites UBERON:0000104life cycle ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 UBERON:0000066fully formed stage UBERON:0000068embryo stage ZFS:0000042Juvenile:Days 30-44 ZFS:0000040Larval:Days 14-20 ZFS:0000033Hatching:Long-pec ZFS:0000036Larval:Day 4 ZFS:0000037Larval:Day 5	5.48e3 5.48e3 5.64e3 5.89e3 7.96e3 8.21e3 1.08e4 1.41e4 1.42e4 1.43e4 1.45e4 1.45e4 1.46e4 1.52e4 1.52e4 1.53e4 1.60e4	81.65 81.65 81.11 80.27 73.35 72.50 63.93 52.86 52.60 52.22 51.56 51.42 51.16 49.22 49.05 48.72 46.52	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 10 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000025Segmentation:10-13 somites ZFS:0000024Segmentation:5-9 somites UBERON:0004707pharyngula stage ZFS:0000026Segmentation:14-19 somites ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage ZFS:0000031Pharyngula:Prim-25 ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec	6.98e3 6.98e3 7.04e3 8.66e3 9.42e3 1.08e4 1.09e4 1.40e4 1.48e4 1.67e4 1.91e4	76.64 76.64 76.43 71.00 68.45 63.78 63.52 53.09 50.35 44.11 35.95	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	7.45e3 7.45e3 2.07e4	75.06 75.06 30.53	AEIR AEIR AEIR
UBERON:4000164	caudal fin	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000033Hatching:Long-pec	7.48e3 7.48e3 1.05e4	74.95 74.95 64.74	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	1.08e4 1.08e4	64.00 64.00	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.08e4 1.08e4	63.86 63.86	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000016Blastula:30%-epiboly ZFS:0000015Blastula:Dome	1.10e4 1.10e4 1.22e4	63.24 63.24 59.25	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 2 stages ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage	1.25e4 1.25e4 2.12e4	58.30 58.30 29.13	AEIR AEIR AEIR
UBERON:0002548	larva	[+] 3 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5 ZFS:0000035Larval:Protruding-mouth	1.34e4 1.34e4 1.38e4 1.59e4	55.28 55.28 53.94 46.85	AEIR AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.45e4 1.45e4	51.45 51.45	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.48e4 1.48e4	50.48 50.48	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.52e4 1.52e4	49.09 49.09	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.58e4 1.58e4	47.05 47.05	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	1.88e4 1.88e4 1.95e4	36.93 36.93 34.71	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	2.18e4 2.18e4	27.14 27.14	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	2.73e4 2.73e4	8.66 8.66	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
EST data: UniGene
RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	5 genes ENSDARG00000052064 si:dkeyp-93a5.2 ENSDARG00000055644 prss60.2 ENSDARG00000063444 si:dkey-32n7.7 ENSDARG00000070710 prss60.3 ENSDARG00000070713 prss60.1	Compare expression	[+]
Clupeocephala	12 genes ENSDARG00000046140 zgc:112038 ENSDARG00000052064 si:dkeyp-93a5.2 ENSDARG00000055644 prss60.2 ENSDARG00000056773 zgc:163079 ENSDARG00000061858 zgc:153968 ENSDARG00000063444 si:dkey-32n7.7 ENSDARG00000070710 prss60.3 ENSDARG00000070713 prss60.1 ENSDARG00000100953 si:dkeyp-93a5.2 ENSDARG00000101956 CU571315.2 ENSDARG00000101990 CU571315.3 ENSDARG00000102727 si:ch73-182e20.4	Compare expression	[+]
Opisthokonta	64 genes ENSDARG00000010097 f9a ENSDARG00000017314 CELA1 (1 to many) ENSDARG00000027196 si:dkey-16l2.17 ENSDARG00000038891 AL954146.1 ENSDARG00000039579 cfd ENSDARG00000039730 zgc:112160 ENSDARG00000040282 zgc:92590 ENSDARG00000040513 zgc:92313 ENSDARG00000042003 si:dkey-78l4.13 ENSDARG00000042993 try ENSDARG00000043171 CELA1 (1 to many) ENSDARG00000043173 CELA1 (1 to many) ENSDARG00000043175 CELA1 (1 to many) ENSDARG00000046140 zgc:112038 ENSDARG00000052064 si:dkeyp-93a5.2 ENSDARG00000052517 AL954146.2 ENSDARG00000055011 si:dkey-33m11.7 ENSDARG00000055014 si:dkey-33m11.8 ENSDARG00000055644 prss60.2 ENSDARG00000056744 ela2 ENSDARG00000056765 ela2l ENSDARG00000056773 zgc:163079 ENSDARG00000059026 zgc:123217 ENSDARG00000061858 zgc:153968 ENSDARG00000063444 si:dkey-32n7.7 ENSDARG00000068680 ctrl ENSDARG00000070710 prss60.3 ENSDARG00000070713 prss60.1 ENSDARG00000071310 si:dkey-78l4.5 ENSDARG00000071381 si:dkey-78l4.11 ENSDARG00000071389 si:dkey-78l4.6 ENSDARG00000073742 prss59.2 ENSDARG00000077058 CELA1 (1 to many) ENSDARG00000077573 tmprss13b ENSDARG00000079274 prss59.1 ENSDARG00000088893 CTRL (1 to many) ENSDARG00000090267 CU062628.1 ENSDARG00000090428 ctrb1 ENSDARG00000092518 si:dkey-21e2.11 ENSDARG00000092532 si:dkey-21e2.4 ENSDARG00000092788 si:dkey-21e2.15 ENSDARG00000092814 si:dkey-21e2.3 ENSDARG00000093415 si:dkey-78l4.1 ENSDARG00000093450 si:dkey-78l4.10 ENSDARG00000093843 si:dkey-21e2.7 ENSDARG00000093844 zgc:136461 ENSDARG00000094077 si:dkey-21e2.16 ENSDARG00000094662 si:dkey-21e2.8 ENSDARG00000094840 si:dkey-21e2.13 ENSDARG00000095005 si:dkey-21e2.10 ENSDARG00000095175 si:dkey-78l4.12 ENSDARG00000095355 si:dkey-78l4.7 ENSDARG00000095384 si:dkey-78l4.2 ENSDARG00000095438 si:dkey-78l4.4 ENSDARG00000095462 CELA1 (1 to many) ENSDARG00000095572 si:dkey-21e2.14 ENSDARG00000095729 si:dkey-21e2.12 ENSDARG00000096975 si:dkeyp-93a5.3 ENSDARG00000098651 si:dkey-21e2.12 ENSDARG00000100953 si:dkeyp-93a5.2 ENSDARG00000101956 CU571315.2 ENSDARG00000101964 CTRL (1 to many) ENSDARG00000101990 CU571315.3 ENSDARG00000102727 si:ch73-182e20.4	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000056324.

Cross-references

Ensembl	ENSDARG00000056324 (zgc:123295)
ZFIN	ZDB-GENE-051127-11 (zgc:123295)
EMBL	CR387996
Uniprot/SPTREMBL	F1QTV7, F1QTV7_DANRE