D. rerio Gene: rnf17 - ENSDARG00000056387 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056387
Namernf17
Descriptionring finger protein 17 [Source:ZFIN;Acc:ZDB-GENE-030131-6451]
OrganismDanio rerio (zebrafish)
Synonym(s)fj98c04, im:7147535, wu:fj98c04
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.03e3
  • 1.03e3
96.54
  • 96.54
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
90.42
  • 90.42
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
90.26
  • 90.26
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.01e3
  • 5.01e3
83.21
  • 83.21
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.26e3
  • 5.26e3
82.39
  • 82.39
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.68e3
  • 5.68e3
80.99
  • 80.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
5.89e3
  • 5.89e3
  • 6.51e3
  • 7.22e3
  • 7.38e3
  • 8.56e3
80.28
  • 80.28
  • 78.19
  • 75.84
  • 75.30
  • 71.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.04e3
  • 6.04e3
79.79
  • 79.79
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
7.45e3
  • 7.45e3
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.24e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
  • 1.77e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
75.04
  • 75.04
  • 59.08
  • 59.08
  • 58.32
  • 58.32
  • 57.30
  • 56.65
  • 56.65
  • 40.57
  • 40.51
  • 40.18
  • 39.85
  • 39.42
  • 38.62
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000670primordial germ cell
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 9.33e3
  • 9.33e3
  • 1.16e4
  • 1.19e4
  • 1.19e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 68.74
  • 68.74
  • 61.10
  • 60.00
  • 60.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
8.53e3
  • 8.53e3
  • 1.12e4
  • 1.17e4
  • 1.29e4
  • 1.38e4
  • 1.38e4
  • 1.39e4
  • 1.39e4
71.43
  • 71.43
  • 62.48
  • 60.70
  • 56.65
  • 53.83
  • 53.83
  • 53.55
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.01e3
  • 9.01e3
69.84
  • 69.84
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.03e4
  • 1.03e4
  • 1.15e4
  • 1.73e4
65.51
  • 65.51
  • 61.50
  • 42.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.46
  • 65.46
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.74
  • 64.74
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.72
  • 62.72
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
  • 1.16e4
  • 1.38e4
  • 1.38e4
62.48
  • 62.48
  • 61.09
  • 53.83
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.90
  • 57.90
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.33
  • 55.33
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
  • 2.01e4
39.55
  • 39.55
  • 32.79
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
1.97e4
  • 1.97e4
34.10
  • 34.10
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.64
  • 33.64
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
30.15
  • 30.15
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.26
  • 27.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000056387 (rnf17)
ZFINZDB-GENE-030131-6451 (rnf17)
EMBLBX537139
Uniprot/SPTREMBLF1R3C5, F1R3C5_DANRE, F1R4H5, F1R4H5_DANRE

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