D. rerio Gene: irf8 - ENSDARG00000056407 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056407
Nameirf8
Descriptioninterferon regulatory factor 8 [Source:ZFIN;Acc:ZDB-GENE-040718-367]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:92252

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.29e3
  • 1.29e3
95.69
  • 95.69
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.52e3
  • 1.52e3
94.93
  • 94.93
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.74e3
  • 3.74e3
87.48
  • 87.48
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.09e3
  • 4.09e3
86.31
  • 86.31
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.17e3
  • 4.17e3
86.04
  • 86.04
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.55e3
  • 5.55e3
81.41
  • 81.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.05e3
  • 7.05e3
76.38
  • 76.38
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.32e3
  • 7.32e3
75.50
  • 75.50
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.85e3
  • 7.85e3
  • 1.48e4
73.70
  • 73.70
  • 50.28
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.33e3
  • 8.33e3
72.12
  • 72.12
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.51e3
  • 8.51e3
71.52
  • 71.52
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.14e3
  • 9.14e3
69.38
  • 69.38
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.29e3
  • 9.29e3
68.89
  • 68.89
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
9.68e3
  • 9.68e3
  • 1.75e4
67.60
  • 67.60
  • 41.27
AEIR
  • AEIR
  • AEIR
CL:0000235macrophage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
66.66
  • 66.66
  • 49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.01e4
  • 1.01e4
66.19
  • 66.19
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.38
  • 64.38
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.20
  • 59.20
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.25e4
  • 1.25e4
58.01
  • 58.01
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.29
  • 52.29
AEIR
  • AEIR
CL:0000839myeloid lineage restricted progenitor cell
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000084yolk
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.57e4
  • 1.57e4
47.58
  • 47.58
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.62e4
  • 1.62e4
45.65
  • 45.65
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
1.66e4
  • 1.66e4
  • 1.78e4
  • 1.94e4
  • 1.97e4
  • 2.03e4
44.41
  • 44.41
  • 40.51
  • 35.07
  • 34.18
  • 32.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.79e4
  • 1.79e4
  • 1.84e4
39.92
  • 39.92
  • 38.55
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC075963, BX890541
EnsemblENSDARG00000056407 (irf8)
Uniprot/SPTREMBLQ6DHK7, Q6DHK7_DANRE
ZFINZDB-GENE-040718-367 (irf8)

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