D. rerio Gene: ccdc125 - ENSDARG00000056477 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056477
Nameccdc125
Descriptioncoiled-coil domain containing 125 [Source:ZFIN;Acc:ZDB-GENE-060526-104]
OrganismDanio rerio (zebrafish)
Synonym(s)loc565477, si:ch211-214j8.8

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.12e3
  • 2.12e3
92.92
  • 92.92
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.59
  • 90.59
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.07e3
  • 4.07e3
86.39
  • 86.39
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.52e3
  • 4.52e3
  • 1.32e4
84.87
  • 84.87
  • 55.89
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.22e3
  • 5.22e3
82.52
  • 82.52
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
6.34e3
  • 6.34e3
  • 9.00e3
78.78
  • 78.78
  • 69.86
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.57e3
  • 6.57e3
78.01
  • 78.01
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.29e3
  • 7.29e3
75.58
  • 75.58
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.93e3
  • 7.93e3
  • 1.10e4
73.45
  • 73.45
  • 63.21
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.27e3
  • 8.27e3
72.33
  • 72.33
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.39e3
  • 8.39e3
71.90
  • 71.90
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.67e3
  • 8.67e3
70.97
  • 70.97
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.42e3
  • 9.42e3
68.46
  • 68.46
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.56e3
  • 9.56e3
67.99
  • 67.99
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
9.90e3
  • 9.90e3
  • 1.27e4
  • 1.51e4
  • 1.51e4
  • 1.53e4
  • 1.56e4
  • 1.61e4
  • 1.67e4
66.86
  • 66.86
  • 57.64
  • 49.53
  • 49.28
  • 48.93
  • 47.74
  • 46.13
  • 44.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.14
  • 64.14
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.20e4
  • 1.20e4
  • 1.51e4
59.70
  • 59.70
  • 49.35
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.10
  • 58.10
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.26e4
  • 1.26e4
  • 1.38e4
  • 1.47e4
57.69
  • 57.69
  • 53.76
  • 50.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
1.29e4
  • 1.29e4
  • 1.43e4
  • 1.43e4
  • 1.45e4
  • 1.48e4
  • 1.50e4
  • 1.52e4
  • 1.56e4
56.87
  • 56.87
  • 52.20
  • 52.00
  • 51.34
  • 50.54
  • 49.77
  • 49.18
  • 47.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.76
  • 55.76
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.82
  • 48.82
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.57e4
  • 1.57e4
  • 1.75e4
47.46
  • 47.46
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.89e4
  • 1.89e4
36.59
  • 36.59
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC163381, BC163384, BX510923
EnsemblENSDARG00000056477 (ccdc125)
Uniprot/SPTREMBLB3DJ72, B3DJ72_DANRE, F1R4V0, F1R4V0_DANRE
Uniprot/SWISSPROTA2BGP7, CC125_DANRE
ZFINZDB-GENE-060526-104 (ccdc125)

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