D. rerio Gene: rab1bb - ENSDARG00000056479 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056479
Namerab1bb
DescriptionRAB1B, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-040625-133]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fc83b07, zgc:86773
Orthologs(s)27 orthologs
Paralog(s)100 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.89e3
  • 1.89e3
  • 5.62e3
93.66
  • 93.66
  • 81.19
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.59e3
  • 2.59e3
  • 9.92e3
91.33
  • 91.33
  • 66.79
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
3.03e3
  • 3.03e3
  • 3.55e3
  • 7.51e3
  • 7.98e3
  • 9.05e3
  • 1.02e4
89.87
  • 89.87
  • 88.12
  • 74.87
  • 73.27
  • 69.70
  • 66.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.19e3
  • 3.19e3
89.32
  • 89.32
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.55e3
  • 3.55e3
88.11
  • 88.11
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.93
  • 86.93
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.96e3
  • 3.96e3
86.74
  • 86.74
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.99e3
  • 3.99e3
86.66
  • 86.66
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
4.17e3
  • 4.17e3
  • 5.28e3
  • 8.13e3
  • 8.20e3
86.04
  • 86.04
  • 82.33
  • 72.78
  • 72.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.23e3
  • 4.23e3
85.84
  • 85.84
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.76e3
  • 4.76e3
84.08
  • 84.08
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.78e3
  • 4.78e3
  • 7.52e3
  • 1.19e4
84.01
  • 84.01
  • 74.82
  • 59.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.10e3
  • 5.10e3
82.91
  • 82.91
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.59e3
  • 5.59e3
  • 6.00e3
81.28
  • 81.28
  • 79.93
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.63e3
  • 5.63e3
81.17
  • 81.17
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
5.68e3
  • 5.68e3
  • 8.56e3
  • 1.14e4
  • 1.36e4
  • 1.72e4
80.97
  • 80.97
  • 71.33
  • 61.81
  • 54.32
  • 42.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.81e3
  • 5.81e3
80.56
  • 80.56
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
5.81e3
  • 5.81e3
  • 7.02e3
  • 1.47e4
  • 1.66e4
80.55
  • 80.55
  • 76.49
  • 50.83
  • 44.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
6.40e3
  • 6.40e3
  • 6.97e3
  • 8.96e3
  • 9.96e3
  • 1.14e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
78.56
  • 78.56
  • 76.66
  • 69.99
  • 66.65
  • 61.88
  • 59.98
  • 58.31
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.43e3
  • 7.43e3
75.11
  • 75.11
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.81e3
  • 7.81e3
73.84
  • 73.84
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.23e3
  • 8.23e3
72.43
  • 72.43
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.87e3
  • 8.87e3
70.30
  • 70.30
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.91e3
  • 8.91e3
70.15
  • 70.15
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.84
  • 64.84
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.02
  • 64.02
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
1.08e4
  • 1.08e4
  • 1.12e4
  • 1.17e4
  • 1.23e4
  • 1.24e4
  • 1.28e4
  • 1.33e4
  • 1.36e4
  • 1.40e4
  • 1.40e4
  • 1.40e4
  • 1.45e4
63.86
  • 63.86
  • 62.61
  • 60.69
  • 58.75
  • 58.42
  • 57.28
  • 55.49
  • 54.59
  • 53.13
  • 53.10
  • 53.07
  • 51.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.17e4
  • 1.17e4
60.69
  • 60.69
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.18e4
  • 1.18e4
  • 1.23e4
  • 1.23e4
60.50
  • 60.50
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.05
  • 52.05
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.72
  • 48.72
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species19 genesCompare expression
Bilateria24 species27 genesCompare expression

Orthology information comes from OMA : ENSDARG00000056479.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi2 genesCompare expression
Bilateria3 genesCompare expression
Opisthokonta23 genesCompare expression
Eukaryota100 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000056479.

Cross-references

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