D. rerio Gene: copb1 - ENSDARG00000056557 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056557
Namecopb1
Descriptioncoatomer protein complex, subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030219-38]
OrganismDanio rerio (zebrafish)
Synonym(s)hap, hap,gn happy, happy, id:ibd5034, q6jwu8, wu:fc66c05, zgc:92482

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.13e3
  • 1.13e3
  • 1.87e3
96.21
  • 96.21
  • 93.74
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.15e3
  • 1.15e3
96.17
  • 96.17
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.27e3
  • 1.27e3
  • 1.91e3
  • 2.20e3
  • 2.97e3
  • 3.12e3
95.74
  • 95.74
  • 93.60
  • 92.63
  • 90.05
  • 89.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000025Segmentation:10-13 somites
1.38e3
  • 1.38e3
  • 3.01e3
  • 1.49e4
95.38
  • 95.38
  • 89.93
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
1.47e3
  • 1.47e3
  • 1.70e3
  • 1.84e3
  • 1.85e3
  • 1.86e3
  • 1.95e3
  • 1.95e3
  • 2.86e3
  • 2.86e3
  • 2.89e3
95.07
  • 95.07
  • 94.32
  • 93.84
  • 93.81
  • 93.79
  • 93.48
  • 93.48
  • 90.43
  • 90.42
  • 90.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.58e3
  • 1.58e3
  • 1.83e3
  • 1.91e3
  • 2.76e3
  • 3.29e3
  • 3.63e3
94.72
  • 94.72
  • 93.87
  • 93.61
  • 90.76
  • 88.98
  • 87.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000106zygote stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
1.79e3
  • 1.79e3
  • 1.80e3
  • 1.85e3
  • 2.07e3
  • 2.26e3
  • 2.26e3
  • 2.29e3
  • 2.36e3
  • 2.37e3
  • 2.68e3
  • 2.69e3
  • 2.93e3
  • 3.74e3
  • 5.69e3
  • 6.51e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 1.41e4
  • 1.44e4
  • 1.45e4
94.01
  • 94.01
  • 93.99
  • 93.80
  • 93.07
  • 92.44
  • 92.43
  • 92.32
  • 92.11
  • 92.07
  • 91.04
  • 90.99
  • 90.19
  • 87.48
  • 80.95
  • 78.21
  • 74.99
  • 74.99
  • 73.32
  • 52.86
  • 51.82
  • 51.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.82e3
  • 1.82e3
93.91
  • 93.91
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.90e3
  • 1.90e3
93.65
  • 93.65
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.91e3
  • 1.91e3
  • 2.27e3
  • 2.34e3
93.60
  • 93.60
  • 92.39
  • 92.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.92e3
  • 1.92e3
  • 4.14e3
93.58
  • 93.58
  • 86.13
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.99e3
  • 1.99e3
93.35
  • 93.35
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
92.87
  • 92.87
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.24e3
  • 2.24e3
92.49
  • 92.49
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.30e3
  • 2.30e3
92.29
  • 92.29
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.33e3
  • 2.33e3
92.21
  • 92.21
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
92.00
  • 92.00
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
2.40e3
  • 2.40e3
  • 3.16e3
  • 3.29e3
  • 3.72e3
91.98
  • 91.98
  • 89.41
  • 88.99
  • 87.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.51e3
  • 2.51e3
91.60
  • 91.60
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.72e3
  • 2.72e3
  • 2.73e3
90.90
  • 90.90
  • 90.87
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.71
  • 90.71
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.85e3
  • 2.85e3
90.45
  • 90.45
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.95e3
  • 2.95e3
90.13
  • 90.13
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.23e3
  • 3.23e3
89.20
  • 89.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.76
  • 88.76
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.77e3
  • 3.77e3
87.38
  • 87.38
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.98e3
  • 3.98e3
86.69
  • 86.69
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.98e3
  • 3.98e3
86.67
  • 86.67
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.73e3
  • 4.73e3
84.15
  • 84.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.19e3
  • 5.19e3
82.63
  • 82.63
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.65e3
  • 5.65e3
81.09
  • 81.09
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.33e3
  • 7.33e3
75.46
  • 75.46
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
1.02e4
  • 1.02e4
  • 1.27e4
  • 1.29e4
65.89
  • 65.89
  • 57.47
  • 56.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAY294010, BC081657
EnsemblENSDARG00000056557 (copb1)
Uniprot/SWISSPROTCOPB_DANRE, Q66HV4
ZFINZDB-GENE-030219-38 (copb1)

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