D. rerio Gene: necab1 - ENSDARG00000056566 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056566
Namenecab1
DescriptionN-terminal EF-hand calcium binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-395]
OrganismDanio rerio (zebrafish)
Synonym(s)xb51, zgc:110161

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000104life cycle
3.16e3
  • 3.16e3
  • 9.33e3
  • 9.51e3
  • 1.45e4
89.43
  • 89.43
  • 68.74
  • 68.17
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.35e3
  • 4.35e3
  • 5.60e3
85.42
  • 85.42
  • 81.27
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.74e3
  • 4.74e3
  • 1.50e4
84.12
  • 84.12
  • 49.93
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000027Segmentation:20-25 somites
  • UBERON:0000066fully formed stage
5.77e3
  • 5.77e3
  • 9.96e3
  • 1.10e4
  • 1.49e4
80.67
  • 80.67
  • 66.65
  • 63.32
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
7.07e3
  • 7.07e3
  • 1.58e4
  • 1.79e4
  • 1.82e4
  • 1.92e4
76.32
  • 76.32
  • 47.19
  • 40.12
  • 38.92
  • 35.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.33e3
  • 8.33e3
  • 1.45e4
72.12
  • 72.12
  • 51.49
AEIR
  • AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 1.19e4
  • 1.49e4
  • 1.49e4
66.67
  • 66.67
  • 60.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
1.10e4
  • 1.10e4
  • 1.17e4
  • 1.34e4
63.32
  • 63.32
  • 60.70
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.14e4
  • 1.14e4
  • 1.14e4
  • 1.21e4
  • 1.23e4
61.75
  • 61.75
  • 61.75
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
1.16e4
  • 1.16e4
  • 1.23e4
  • 1.36e4
61.09
  • 61.09
  • 58.80
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
59.98
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
  • 1.21e4
  • 1.27e4
  • 1.27e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
59.36
  • 59.36
  • 59.36
  • 57.47
  • 57.47
  • 57.13
  • 56.79
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000035Larval:Protruding-mouth
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000030Pharyngula:Prim-15
1.42e4
  • 1.42e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.14
  • 49.14
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.64e4
  • 1.64e4
  • 1.68e4
44.94
  • 44.94
  • 43.83
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.68e4
  • 1.68e4
43.86
  • 43.86
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.34
  • 35.34
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.96
  • 32.96
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
26.19
  • 26.19
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.63
  • 25.63
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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