D. rerio Gene: cpeb4 - ENSDARG00000056691 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056691
Namecpeb4
Descriptioncytoplasmic polyadenylation element binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1557]
OrganismDanio rerio (zebrafish)
Synonym(s)cpeb3, zgc:66166

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
718
  • 718
  • 2.18e3
  • 5.02e3
  • 5.11e3
  • 5.71e3
97.60
  • 97.60
  • 92.69
  • 83.19
  • 82.88
  • 80.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
820
  • 820
97.26
  • 97.26
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.08e3
  • 1.08e3
96.39
  • 96.39
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.71e3
  • 1.71e3
94.29
  • 94.29
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.09e3
  • 3.09e3
89.66
  • 89.66
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
3.13e3
  • 3.13e3
  • 7.73e3
  • 8.73e3
  • 1.02e4
  • 1.03e4
  • 1.12e4
89.53
  • 89.53
  • 74.12
  • 70.77
  • 65.87
  • 65.59
  • 62.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.27e3
  • 3.27e3
89.05
  • 89.05
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.28e3
  • 3.28e3
89.02
  • 89.02
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.47e3
  • 3.47e3
88.38
  • 88.38
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.65e3
  • 3.65e3
  • 5.45e3
87.78
  • 87.78
  • 81.76
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.22e3
  • 4.22e3
  • 1.64e4
85.88
  • 85.88
  • 44.93
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.40e3
  • 4.40e3
85.26
  • 85.26
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
4.50e3
  • 4.50e3
  • 6.49e3
  • 9.83e3
  • 1.00e4
  • 1.15e4
  • 1.50e4
  • 1.50e4
  • 1.51e4
84.92
  • 84.92
  • 78.28
  • 67.10
  • 66.50
  • 61.46
  • 49.79
  • 49.63
  • 49.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.88e3
  • 4.88e3
83.65
  • 83.65
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
82.57
  • 82.57
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
82.28
  • 82.28
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.20
  • 81.20
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.82e3
  • 5.82e3
80.51
  • 80.51
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.40e3
  • 6.40e3
  • 6.97e3
78.56
  • 78.56
  • 76.66
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
6.59e3
  • 6.59e3
  • 8.87e3
  • 1.04e4
  • 1.29e4
  • 1.40e4
  • 1.42e4
  • 1.50e4
  • 1.51e4
  • 1.52e4
  • 1.55e4
  • 1.56e4
  • 1.59e4
77.94
  • 77.94
  • 70.29
  • 65.18
  • 56.82
  • 53.14
  • 52.46
  • 49.66
  • 49.47
  • 49.04
  • 48.23
  • 47.70
  • 46.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.14e3
  • 7.14e3
  • 7.42e3
76.10
  • 76.10
  • 75.14
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.25e3
  • 7.25e3
75.71
  • 75.71
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.57e3
  • 7.57e3
74.67
  • 74.67
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.52e3
  • 8.52e3
71.46
  • 71.46
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.56e3
  • 8.56e3
  • 1.36e4
  • 1.43e4
71.32
  • 71.32
  • 54.30
  • 52.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.91e3
  • 8.91e3
70.17
  • 70.17
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.51e3
  • 9.51e3
68.15
  • 68.15
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.10e4
  • 1.20e4
  • 1.23e4
  • 1.26e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
63.32
  • 63.32
  • 63.32
  • 63.32
  • 59.98
  • 58.80
  • 57.68
  • 57.13
  • 57.13
  • 57.13
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.12e4
  • 1.12e4
  • 1.17e4
  • 1.17e4
  • 1.20e4
  • 1.20e4
62.48
  • 62.48
  • 60.70
  • 60.70
  • 59.98
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.14e4
  • 1.14e4
  • 1.14e4
61.75
  • 61.75
  • 61.75
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.63
  • 60.63
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
59.98
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.21e4
  • 1.21e4
  • 1.21e4
  • 1.27e4
  • 1.27e4
  • 1.29e4
59.36
  • 59.36
  • 59.36
  • 57.47
  • 57.47
  • 56.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.30e4
  • 1.30e4
56.31
  • 56.31
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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