D. rerio Gene: utp3 - ENSDARG00000056720 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056720
Nameutp3
DescriptionUTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040912-163]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:92127
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.62
  • 95.62
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.35e3
  • 1.35e3
  • 1.50e4
95.47
  • 95.47
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.53e3
  • 1.53e3
  • 2.39e3
  • 6.51e3
  • 7.77e3
  • 7.82e3
94.88
  • 94.88
  • 91.99
  • 78.19
  • 73.99
  • 73.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.95e3
  • 1.95e3
93.47
  • 93.47
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.99e3
  • 1.99e3
  • 2.84e3
  • 3.17e3
  • 3.23e3
  • 4.84e3
  • 8.07e3
93.33
  • 93.33
  • 90.49
  • 89.40
  • 89.19
  • 83.81
  • 72.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.53e3
  • 2.53e3
91.55
  • 91.55
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.91e3
  • 2.91e3
90.24
  • 90.24
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
89.37
  • 89.37
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.79e3
  • 3.79e3
87.31
  • 87.31
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
3.90e3
  • 3.90e3
  • 4.30e3
  • 5.14e3
  • 5.61e3
  • 5.91e3
  • 6.37e3
  • 6.56e3
  • 7.19e3
  • 8.25e3
  • 1.31e4
86.94
  • 86.94
  • 85.62
  • 82.81
  • 81.20
  • 80.22
  • 78.66
  • 78.05
  • 75.91
  • 72.36
  • 56.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.94e3
  • 3.94e3
86.82
  • 86.82
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.95e3
  • 3.95e3
86.79
  • 86.79
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.73
  • 85.73
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.28e3
  • 4.28e3
85.67
  • 85.67
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
4.45e3
  • 4.45e3
  • 4.86e3
  • 4.86e3
  • 4.98e3
  • 5.11e3
  • 5.82e3
  • 5.89e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
  • 9.38e3
  • 1.05e4
  • 1.06e4
  • 1.11e4
  • 1.16e4
  • 1.18e4
  • 1.22e4
  • 1.37e4
  • 1.41e4
  • 1.44e4
85.11
  • 85.11
  • 83.73
  • 83.73
  • 83.33
  • 82.90
  • 80.53
  • 80.28
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
  • 68.59
  • 64.78
  • 64.45
  • 62.78
  • 61.06
  • 60.57
  • 58.99
  • 54.03
  • 52.87
  • 51.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.45e3
  • 4.45e3
85.09
  • 85.09
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.88
  • 84.88
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.55e3
  • 4.55e3
  • 6.28e3
84.77
  • 84.77
  • 78.98
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.91e3
  • 4.91e3
  • 5.99e3
83.58
  • 83.58
  • 79.95
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.00e3
  • 5.00e3
  • 6.43e3
  • 7.95e3
  • 9.57e3
83.24
  • 83.24
  • 78.47
  • 73.39
  • 67.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.08e3
  • 5.08e3
83.00
  • 83.00
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
82.56
  • 82.56
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.24e3
  • 5.24e3
82.44
  • 82.44
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
80.88
  • 80.88
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.78e3
  • 5.78e3
80.65
  • 80.65
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.39e3
  • 6.39e3
78.62
  • 78.62
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.85e3
  • 6.85e3
77.05
  • 77.05
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
72.01
  • 72.01
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.04e3
  • 9.04e3
  • 1.07e4
69.73
  • 69.73
  • 64.29
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.85e3
  • 9.85e3
  • 1.02e4
67.01
  • 67.01
  • 65.79
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.92e3
  • 9.92e3
66.79
  • 66.79
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.10e4
  • 1.10e4
  • 1.18e4
  • 1.47e4
63.11
  • 63.11
  • 60.63
  • 50.91
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000056720.

Cross-references

EnsemblENSDARG00000056720 (utp3)
ZFINZDB-GENE-040912-163 (utp3)
EMBLBC081603, BX005135
Uniprot/SPTREMBLQ66I02, Q66I02_DANRE

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