D. rerio Gene: hmgb3a - ENSDARG00000056725 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056725
Namehmgb3a
Descriptionhigh mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb17a03, wu:fk52f12, zgc:162415

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000104life cycle
164
  • 164
  • 972
  • 8.96e3
  • 1.33e4
99.46
  • 99.46
  • 96.75
  • 70.00
  • 55.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
223
  • 223
  • 589
99.26
  • 99.26
  • 98.03
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072334 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • UBERON:00072322 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000049segmentation
  • UBERON:0000068embryo stage
253
  • 253
  • 299
  • 355
  • 368
  • 386
  • 396
  • 413
  • 544
  • 587
  • 593
  • 737
  • 784
  • 811
  • 4.98e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 9.51e3
  • 9.51e3
  • 1.10e4
  • 1.19e4
  • 1.40e4
  • 1.44e4
99.16
  • 99.16
  • 99.00
  • 98.81
  • 98.77
  • 98.71
  • 98.68
  • 98.62
  • 98.18
  • 98.04
  • 98.02
  • 97.54
  • 97.38
  • 97.29
  • 83.33
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 68.17
  • 68.17
  • 63.32
  • 60.14
  • 53.08
  • 51.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
267
  • 267
  • 290
  • 313
  • 321
  • 361
  • 435
  • 495
  • 502
  • 584
  • 963
99.11
  • 99.11
  • 99.03
  • 98.95
  • 98.93
  • 98.80
  • 98.55
  • 98.35
  • 98.32
  • 98.05
  • 96.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
321
  • 321
98.93
  • 98.93
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
393
  • 393
  • 454
  • 461
98.69
  • 98.69
  • 98.48
  • 98.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
405
  • 405
  • 407
  • 761
  • 4.33e3
98.65
  • 98.65
  • 98.64
  • 97.46
  • 85.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
475
  • 475
98.41
  • 98.41
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
528
  • 528
  • 1.19e4
98.23
  • 98.23
  • 60.31
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
561
  • 561
98.12
  • 98.12
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
599
  • 599
  • 690
  • 716
  • 764
  • 1.03e3
  • 1.33e3
98.00
  • 98.00
  • 97.69
  • 97.61
  • 97.45
  • 96.55
  • 95.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
616
  • 616
  • 1.43e3
  • 1.21e4
97.94
  • 97.94
  • 95.23
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
768
  • 768
  • 7.44e3
97.43
  • 97.43
  • 75.09
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
947
  • 947
96.83
  • 96.83
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.66e3
  • 1.66e3
94.46
  • 94.46
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
2.20e3
  • 2.20e3
  • 2.93e3
  • 9.69e3
  • 1.18e4
  • 1.18e4
92.65
  • 92.65
  • 90.19
  • 67.56
  • 60.61
  • 60.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
2.22e3
  • 2.22e3
92.58
  • 92.58
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.50
  • 91.50
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.57e3
  • 2.57e3
91.38
  • 91.38
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.58e3
  • 2.58e3
91.37
  • 91.37
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.80e3
  • 2.80e3
90.63
  • 90.63
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.92e3
  • 2.92e3
90.21
  • 90.21
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.23e3
  • 3.23e3
89.19
  • 89.19
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.29e3
  • 3.29e3
88.99
  • 88.99
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.80e3
  • 4.80e3
83.94
  • 83.94
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.98
  • 77.98
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
77.29
  • 77.29
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.88e3
  • 6.88e3
76.96
  • 76.96
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.21e3
  • 7.21e3
75.85
  • 75.85
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.51e3
  • 7.51e3
74.85
  • 74.85
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
9.34e3
  • 9.34e3
68.74
  • 68.74
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.86e3
  • 9.86e3
67.00
  • 67.00
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.28e4
66.66
  • 66.66
  • 57.12
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.39
  • 58.39
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000022Gastrula:Bud
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
  • 1.34e4
57.13
  • 57.13
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000022Gastrula:Bud
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.50e4
55.16
  • 55.16
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0007282presumptive segmental plate
  • ZFS:0000022Gastrula:Bud
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:2000228lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX005022
EnsemblENSDARG00000056725 (hmgb3a)
Uniprot/SPTREMBLE7EZP6, E7EZP6_DANRE, F1QGP8, F1QGP8_DANRE
ZFINZDB-GENE-050428-1 (hmgb3a)

Do not show this banner again