D. rerio Gene: her4.2 - ENSDARG00000056729 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056729
Nameher4.2
Descriptionhairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
OrganismDanio rerio (zebrafish)
Synonym(s)fe18g04, her-4, her4, her4.1, hes5d, si:ch73-21g5.3, zgc:55218

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.87e3
  • 2.87e3
  • 7.98e3
90.38
  • 90.38
  • 73.27
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
2.90e3
  • 2.90e3
  • 3.72e3
  • 3.83e3
  • 5.65e3
  • 6.02e3
  • 7.52e3
  • 1.03e4
  • 1.06e4
  • 1.11e4
  • 1.39e4
90.30
  • 90.30
  • 87.55
  • 87.18
  • 81.10
  • 79.86
  • 74.83
  • 65.61
  • 64.45
  • 62.82
  • 53.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.11e3
  • 5.11e3
  • 1.74e4
82.91
  • 82.91
  • 41.62
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
6.42e3
  • 6.42e3
  • 8.65e3
  • 8.91e3
  • 1.23e4
  • 1.26e4
  • 1.32e4
  • 1.40e4
  • 1.49e4
  • 1.53e4
  • 1.55e4
  • 1.60e4
  • 1.60e4
78.51
  • 78.51
  • 71.03
  • 70.18
  • 58.86
  • 57.78
  • 55.65
  • 53.12
  • 50.07
  • 48.85
  • 48.25
  • 46.57
  • 46.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.84e3
  • 6.84e3
  • 1.23e4
77.10
  • 77.10
  • 58.88
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.08e4
  • 1.08e4
63.72
  • 63.72
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.25e4
  • 1.25e4
  • 1.35e4
  • 1.54e4
58.01
  • 58.01
  • 54.68
  • 48.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.29e4
  • 1.29e4
56.76
  • 56.76
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.30e4
  • 1.30e4
  • 1.59e4
  • 1.75e4
56.49
  • 56.49
  • 46.84
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.48
  • 29.48
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.58e4
  • 2.58e4
13.72
  • 13.72
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCU062502
EnsemblENSDARG00000056729 (her4.2)
Uniprot/SPTREMBLB0V3D4, B0V3D4_DANRE
ZFINZDB-GENE-060815-1 (her4.2)

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