D. rerio Gene: tmeff1b - ENSDARG00000056740 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056740
Nametmeff1b
Descriptiontransmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
OrganismDanio rerio (zebrafish)
Synonym(s)fb53c10, tmeff1, wu:fb53c10, zgc:110069
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
749
  • 749
97.50
  • 97.50
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
813
  • 813
  • 7.05e3
97.28
  • 97.28
  • 76.40
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
1.06e3
  • 1.06e3
  • 1.14e3
  • 1.33e3
  • 1.49e3
  • 1.62e3
  • 2.47e3
  • 3.42e3
  • 4.20e3
  • 4.22e3
  • 5.13e3
96.46
  • 96.46
  • 96.19
  • 95.56
  • 95.03
  • 94.58
  • 91.73
  • 88.54
  • 85.94
  • 85.89
  • 82.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.17e3
  • 1.17e3
  • 5.82e3
  • 6.64e3
  • 1.65e4
96.07
  • 96.07
  • 80.52
  • 77.76
  • 44.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.37e3
  • 1.37e3
95.41
  • 95.41
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.42e3
  • 1.42e3
  • 2.22e3
  • 2.93e3
  • 3.02e3
  • 3.72e3
  • 9.83e3
95.25
  • 95.25
  • 92.58
  • 90.18
  • 89.88
  • 87.54
  • 67.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.81e3
  • 1.81e3
  • 1.97e3
  • 1.99e3
  • 2.02e3
  • 2.13e3
  • 2.29e3
  • 2.29e3
  • 2.49e3
  • 2.92e3
  • 3.64e3
  • 4.34e3
  • 4.70e3
  • 5.78e3
  • 1.40e4
  • 1.44e4
  • 1.46e4
93.93
  • 93.93
  • 93.40
  • 93.33
  • 93.24
  • 92.88
  • 92.35
  • 92.34
  • 91.66
  • 90.24
  • 87.80
  • 85.48
  • 84.25
  • 80.65
  • 53.08
  • 51.88
  • 51.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.05e3
  • 2.05e3
  • 2.69e3
  • 1.49e4
93.13
  • 93.13
  • 90.99
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.63e3
  • 2.63e3
  • 3.11e3
  • 3.60e3
91.20
  • 91.20
  • 89.57
  • 87.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
4.71e3
  • 4.71e3
84.23
  • 84.23
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.12e3
  • 5.12e3
82.85
  • 82.85
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
  • 1.49e4
80.89
  • 80.89
  • 50.19
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.80e3
  • 5.80e3
80.60
  • 80.60
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.38e3
  • 6.38e3
78.65
  • 78.65
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.91e3
  • 8.91e3
70.17
  • 70.17
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
8.95e3
  • 8.95e3
  • 1.21e4
  • 1.67e4
70.04
  • 70.04
  • 59.64
  • 44.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.01
  • 63.01
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
  • 1.38e4
62.92
  • 62.92
  • 53.86
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.14
  • 61.14
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.50e4
55.82
  • 55.82
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.95
  • 54.95
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.69
  • 50.69
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.40
  • 48.40
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
44.95
  • 44.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.26
  • 43.26
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.37
  • 41.37
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.01
  • 41.01
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000056740.

Cross-references

EnsemblENSDARG00000056740 (tmeff1b)
ZFINZDB-GENE-050706-143 (tmeff1b)
EMBLCU019563
Uniprot/SPTREMBLF1QSU6, F1QSU6_DANRE

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