D. rerio Gene: senp3b - ENSDARG00000056741 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056741
Namesenp3b
DescriptionSUMO1/sentrin/SMT3 specific peptidase 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6714]
OrganismDanio rerio (zebrafish)
Synonym(s)fa03d07, wu:fa03d07

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.35e3
  • 1.35e3
  • 1.45e3
  • 1.56e3
  • 1.92e3
  • 1.95e3
95.48
  • 95.48
  • 95.16
  • 94.79
  • 93.57
  • 93.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.57e3
  • 1.57e3
94.75
  • 94.75
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.75e3
  • 1.75e3
94.15
  • 94.15
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.03e3
  • 2.03e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.10e3
  • 2.10e3
  • 1.45e4
92.97
  • 92.97
  • 51.36
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
92.87
  • 92.87
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
2.17e3
  • 2.17e3
  • 2.45e3
  • 2.49e3
  • 2.58e3
  • 2.76e3
  • 2.95e3
92.75
  • 92.75
  • 91.81
  • 91.66
  • 91.38
  • 90.77
  • 90.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
2.34e3
  • 2.34e3
  • 2.87e3
  • 2.96e3
  • 3.00e3
  • 3.27e3
  • 3.46e3
  • 3.56e3
  • 4.14e3
  • 6.25e3
  • 6.26e3
  • 7.10e3
  • 7.36e3
  • 7.97e3
  • 9.10e3
  • 9.83e3
  • 1.45e4
  • 1.45e4
  • 1.49e4
92.15
  • 92.15
  • 90.38
  • 90.09
  • 89.95
  • 89.04
  • 88.43
  • 88.10
  • 86.15
  • 79.07
  • 79.05
  • 76.24
  • 75.34
  • 73.33
  • 69.54
  • 67.10
  • 51.56
  • 51.42
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.61e3
  • 2.61e3
91.27
  • 91.27
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.88e3
  • 2.88e3
90.37
  • 90.37
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.20e3
  • 3.20e3
  • 3.75e3
  • 6.53e3
  • 9.41e3
89.29
  • 89.29
  • 87.43
  • 78.13
  • 68.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.76e3
  • 3.76e3
  • 4.51e3
  • 4.59e3
  • 4.85e3
  • 5.05e3
  • 5.14e3
  • 5.60e3
  • 6.36e3
  • 6.89e3
  • 8.62e3
87.42
  • 87.42
  • 84.89
  • 84.62
  • 83.75
  • 83.10
  • 82.81
  • 81.24
  • 78.70
  • 76.94
  • 71.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.32e3
  • 4.32e3
85.54
  • 85.54
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.76e3
  • 4.76e3
84.08
  • 84.08
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.95e3
  • 4.95e3
  • 8.35e3
83.44
  • 83.44
  • 72.04
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.99e3
  • 4.99e3
  • 6.27e3
  • 1.49e4
83.30
  • 83.30
  • 79.02
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.67e3
  • 5.67e3
81.02
  • 81.02
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.69e3
  • 5.69e3
80.95
  • 80.95
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.76e3
  • 5.76e3
  • 9.75e3
80.73
  • 80.73
  • 67.35
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
  • 1.03e4
77.88
  • 77.88
  • 65.36
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.03
  • 77.03
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.23e3
  • 7.23e3
75.79
  • 75.79
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.68e3
  • 7.68e3
  • 7.87e3
  • 8.83e3
74.29
  • 74.29
  • 73.64
  • 70.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.11e3
  • 8.11e3
72.86
  • 72.86
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.47e3
  • 9.47e3
68.28
  • 68.28
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.67e3
  • 9.67e3
67.62
  • 67.62
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.93e3
  • 9.93e3
66.74
  • 66.74
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.97e3
  • 9.97e3
66.61
  • 66.61
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.48
  • 66.48
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.63
  • 65.63
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.26
  • 63.26
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.42
  • 60.42
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EnsemblENSDARG00000056741 (senp3b)
ZFINZDB-GENE-030131-6714 (senp3b)
EMBLCR848032
Uniprot/SPTREMBLF1QS17, F1QS17_DANRE

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