D. rerio Gene: crmp1 - ENSDARG00000056742 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056742
Namecrmp1
Descriptioncollapsin response mediator protein 1 [Source:ZFIN;Acc:ZDB-GENE-050720-1]
OrganismDanio rerio (zebrafish)
Synonym(s)crmp-1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
  • 7.08e3
92.08
  • 92.08
  • 76.31
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
2.64e3
  • 2.64e3
  • 1.29e4
91.15
  • 91.15
  • 56.79
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
3.11e3
  • 3.11e3
89.59
  • 89.59
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
3.87e3
  • 3.87e3
  • 4.78e3
  • 1.57e4
  • 1.57e4
  • 1.62e4
87.06
  • 87.06
  • 83.98
  • 47.60
  • 47.41
  • 45.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
6.08e3
  • 6.08e3
  • 1.22e4
79.64
  • 79.64
  • 59.08
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.78e3
  • 8.78e3
70.61
  • 70.61
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
1.17e4
  • 1.17e4
60.70
  • 60.70
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.33e4
60.39
  • 60.39
  • 55.53
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.41e4
60.39
  • 60.39
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000029Pharyngula:Prim-5
1.21e4
  • 1.21e4
59.50
  • 59.50
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.46e4
  • 1.46e4
  • 1.50e4
50.97
  • 50.97
  • 49.73
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.34
  • 50.34
AEIR
  • AEIR
UBERON:2001340nucleus of the tract of the postoptic commissure
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.19
  • 42.19
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.84
  • 40.84
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.65
  • 39.65
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.44
  • 37.44
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.51
  • 32.51
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.25
  • 25.25
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.36e4
  • 2.36e4
20.91
  • 20.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX530018
EnsemblENSDARG00000056742 (crmp1)
Uniprot/SPTREMBLF1QR62, F1QR62_DANRE
ZFINZDB-GENE-050720-1 (crmp1)

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