D. rerio Gene: raraa - ENSDARG00000056783 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056783
Nameraraa
Descriptionretinoic acid receptor, alpha a [Source:ZFIN;Acc:ZDB-GENE-980526-284]
OrganismDanio rerio (zebrafish)
Synonym(s)etid309833.12, nr1b1-a, nr1b1a, q91391, rara, rara2a, raralpha-a, zgc:109797, zrar, zrar-alpha, zrar-alpha-2.a, zrara

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007135neural keel
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
2.96e3
  • 2.96e3
  • 3.70e3
  • 4.93e3
90.00169
  • 90.00169
  • 87.50170
  • 83.33503
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000035Larval:Protruding-mouth
2.96e3
  • 2.96e3
90.00000
  • 90.00000
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
3.96e3
  • 3.96e3
  • 7.40e3
  • 7.75e3
  • 8.08e3
86.63071
  • 86.63071
  • 74.98815
  • 73.79430
  • 72.71036
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
4.04e3
  • 4.04e3
  • 9.11e3
  • 9.51e3
  • 9.51e3
  • 9.87e3
  • 1.02e4
  • 1.20e4
  • 1.22e4
86.36196
  • 86.36196
  • 69.22062
  • 67.84530
  • 67.84530
  • 66.64976
  • 65.60979
  • 59.35640
  • 58.80324
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000022Gastrula:Bud
4.15e3
  • 4.15e3
  • 8.95e3
  • 9.86e3
85.97941
  • 85.97941
  • 69.76324
  • 66.66666
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
4.23e3
  • 4.23e3
  • 5.18e3
  • 8.14e3
  • 8.99e3
  • 1.04e4
  • 1.06e4
  • 1.09e4
  • 1.16e4
  • 1.18e4
85.71092
  • 85.71092
  • 82.49154
  • 72.48478
  • 69.61749
  • 64.97970
  • 64.26374
  • 63.13761
  • 60.84251
  • 59.97634
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
4.23e3
  • 4.23e3
  • 5.69e3
  • 5.69e3
  • 1.48e4
  • 1.48e4
85.71092
  • 85.71092
  • 80.76417
  • 80.76417
  • 50.00000
  • 49.99831
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000106zygote stage
4.52e3
  • 4.52e3
  • 5.90e3
  • 6.01e3
  • 6.44e3
  • 7.53e3
  • 7.58e3
  • 8.04e3
  • 8.93e3
  • 9.12e3
  • 9.49e3
  • 9.78e3
  • 1.02e4
  • 1.11e4
  • 1.13e4
  • 1.15e4
84.71786
  • 84.71786
  • 80.07829
  • 79.68861
  • 78.22368
  • 74.56104
  • 74.38807
  • 72.82786
  • 69.83390
  • 69.18028
  • 67.92371
  • 66.96393
  • 65.68533
  • 62.51436
  • 61.74610
  • 61.12426
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.99e3
  • 4.99e3
83.14633
  • 83.14633
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
5.18e3
  • 5.18e3
82.49154
  • 82.49154
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.42e3
  • 5.42e3
  • 5.69e3
  • 5.87e3
  • 5.96e3
  • 6.74e3
  • 7.10e3
  • 7.71e3
  • 9.03e3
  • 1.07e4
  • 1.27e4
81.70050
  • 81.70050
  • 80.77164
  • 80.15987
  • 79.84848
  • 77.20930
  • 76.01200
  • 73.92970
  • 69.49592
  • 64.00024
  • 57.16928
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
5.55e3
  • 5.55e3
  • 6.34e3
  • 6.34e3
81.24831
  • 81.24831
  • 78.56975
  • 78.56975
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.92e3
  • 5.92e3
  • 7.93e3
  • 1.01e4
  • 1.04e4
  • 1.11e4
  • 1.11e4
  • 1.14e4
  • 1.21e4
79.99662
  • 79.99662
  • 73.19230
  • 65.77088
  • 64.68900
  • 62.47802
  • 62.47802
  • 61.33828
  • 59.06386
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
6.09e3
  • 6.09e3
79.40331
  • 79.40331
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
6.34e3
  • 6.34e3
  • 6.34e3
  • 6.34e3
  • 6.58e3
  • 7.05e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.89e3
  • 8.88e3
  • 9.62e3
  • 9.87e3
78.56975
  • 78.56975
  • 78.56975
  • 78.56975
  • 77.77439
  • 76.17697
  • 74.99829
  • 74.99829
  • 74.99829
  • 73.32320
  • 69.98310
  • 67.48142
  • 66.65314
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.34e3
  • 6.34e3
  • 7.89e3
  • 9.87e3
78.56975
  • 78.56975
  • 73.32320
  • 66.65652
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.34e3
  • 6.34e3
  • 1.21e4
  • 1.21e4
  • 1.21e4
  • 1.32e4
  • 1.32e4
78.56468
  • 78.56468
  • 59.07907
  • 59.07907
  • 59.07907
  • 55.54540
  • 55.54540
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.91e3
  • 6.91e3
  • 8.27e3
  • 1.04e4
  • 1.08e4
76.65821
  • 76.65821
  • 72.06235
  • 64.97970
  • 63.60388
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
7.01e3
  • 7.01e3
  • 7.40e3
  • 7.40e3
  • 8.22e3
  • 8.46e3
  • 1.48e4
76.30396
  • 76.30396
  • 74.98815
  • 74.98815
  • 72.20871
  • 71.42518
  • 50.00169
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
7.20e3
  • 7.20e3
  • 8.46e3
  • 9.11e3
  • 1.05e4
  • 1.13e4
75.66633
  • 75.66633
  • 71.42508
  • 69.22853
  • 64.53622
  • 61.67793
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
7.52e3
  • 7.52e3
  • 8.88e3
  • 1.11e4
  • 1.23e4
74.57209
  • 74.57209
  • 69.99831
  • 62.49323
  • 58.30291
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.07e3
  • 8.07e3
  • 1.08e4
  • 1.11e4
72.72050
  • 72.72050
  • 63.62621
  • 62.48816
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.32e3
  • 8.32e3
71.87907
  • 71.87907
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
8.46e3
  • 8.46e3
  • 8.57e3
  • 8.57e3
  • 1.37e4
  • 1.38e4
71.41166
  • 71.41166
  • 71.03743
  • 71.03743
  • 53.82925
  • 53.31307
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.62e3
  • 8.62e3
  • 9.38e3
  • 9.86e3
70.86411
  • 70.86411
  • 68.29493
  • 66.68727
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.68e3
  • 8.68e3
70.67068
  • 70.67068
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.33e3
  • 9.33e3
  • 1.19e4
68.46046
  • 68.46046
  • 59.63487
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
9.57e3
  • 9.57e3
67.66126
  • 67.66126
AEIR
  • AEIR
UBERON:0004750blastoderm
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
9.86e3
  • 9.86e3
  • 1.48e4
  • 1.48e4
  • 1.48e4
66.66666
  • 66.66666
  • 50.00169
  • 49.99831
  • 49.99831
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008781blastodisc derived epiblast
  • ZFS:0000020Gastrula:75%-epiboly
9.86e3
  • 9.86e3
66.66666
  • 66.66666
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.93e3
  • 9.93e3
66.43402
  • 66.43402
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.47750
  • 65.47750
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
64.96713
  • 64.96713
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.23654
  • 63.23654
AEIR
  • AEIR
UBERON:0003351pharyngeal epithelium
  • ZFS:0000033Hatching:Long-pec
1.11e4
  • 1.11e4
62.49830
  • 62.49830
AEIR
  • AEIR
UBERON:0007294presumptive rhombomere 7
  • ZFS:0000024Segmentation:5-9 somites
1.11e4
  • 1.11e4
62.49830
  • 62.49830
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
1.11e4
  • 1.11e4
  • 1.34e4
62.49830
  • 62.49830
  • 54.73317
AEIR
  • AEIR
  • AEIR
ZFA:0001065lateral mesoderm (Danio)
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
1.11e4
  • 1.11e4
  • 1.48e4
  • 1.48e4
62.49830
  • 62.49830
  • 50.00169
  • 49.99831
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.39163
  • 62.39163
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
60.71910
  • 60.71910
AEIR
  • AEIR
UBERON:0007293presumptive rhombomere 6
  • ZFS:0000024Segmentation:5-9 somites
1.18e4
  • 1.18e4
59.99662
  • 59.99662
AEIR
  • AEIR
UBERON:0005511rhombomere 4
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
  • 1.23e4
58.32826
  • 58.32826
  • 58.32826
AEIR
  • AEIR
  • AEIR
UBERON:0007690early pharyngeal endoderm
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
58.32826
  • 58.32826
AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
1.23e4
  • 1.23e4
  • 1.36e4
58.31981
  • 58.31981
  • 54.15145
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
57.93352
  • 57.93352
AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.27e4
  • 1.27e4
  • 1.32e4
57.13609
  • 57.13609
  • 55.54540
AEIR
  • AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000022Gastrula:Bud
1.29e4
  • 1.29e4
56.24156
  • 56.24156
AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
56.24156
  • 56.24156
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
55.72361
  • 55.72361
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
1.32e4
  • 1.32e4
55.23779
  • 55.23779
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
54.95773
  • 54.95773
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
54.70231
  • 54.70231
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.39e4
  • 1.39e4
52.99434
  • 52.99434
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
52.62704
  • 52.62704
AEIR
  • AEIR
UBERON:0007277presumptive hindbrain
  • ZFS:0000020Gastrula:75%-epiboly
1.48e4
  • 1.48e4
49.99831
  • 49.99831
AEIR
  • AEIR
UBERON:2007036hindbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.48e4
  • 1.48e4
49.99831
  • 49.99831
AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.48e4
  • 1.48e4
49.98986
  • 49.98986
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
36.70846
  • 36.70846
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC092692, KF148618, L03398, S74155
EnsemblENSDARG00000056783 (raraa)
Uniprot/SPTREMBLT2DKU4, T2DKU4_DANRE
Uniprot/SWISSPROTQ90271, RARAA_DANRE
ZFINZDB-GENE-980526-284 (raraa)

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