D. rerio Gene: PDE6H - ENSDARG00000056791 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056791
NamePDE6H
Descriptionzgc:112320 [Source:ZFIN;Acc:ZDB-GENE-050522-144]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:153837, zgc:158528

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.25e3
  • 1.25e3
  • 4.51e3
95.81
  • 95.81
  • 84.89
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
  • 1.39e4
95.47
  • 95.47
  • 53.34
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
6.45e3
  • 6.45e3
  • 2.44e4
78.40
  • 78.40
  • 18.14
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
7.95e3
  • 7.95e3
73.37
  • 73.37
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.46e4
55.16
  • 55.16
  • 51.26
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.96
  • 39.96
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.72
  • 36.72
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.49
  • 33.49
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.42e4
  • 2.42e4
19.04
  • 19.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000056791 (PDE6H)
HGNCHGNC:8790 (PDE6H)
ZFINZDB-GENE-050522-144 (zgc:112320)
EMBLBC095757, BC122428, BC129270, CU571315
Uniprot/SPTREMBLQ502C6, Q502C6_DANRE

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