D. rerio Gene: exo1 - ENSDARG00000056832 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056832
Nameexo1
Descriptionexonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2828]
OrganismDanio rerio (zebrafish)
Synonym(s)fc16e04, wu:fc16e04, zgc:55521
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
966
  • 966
96.77
  • 96.77
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.35e3
  • 1.35e3
95.47
  • 95.47
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.05e3
  • 2.05e3
93.13
  • 93.13
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
2.38e3
  • 2.38e3
  • 4.31e3
  • 5.69e3
  • 6.31e3
  • 8.53e3
92.03
  • 92.03
  • 85.58
  • 80.94
  • 78.87
  • 71.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.05e3
  • 3.05e3
  • 1.50e4
89.79
  • 89.79
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
3.12e3
  • 3.12e3
  • 7.34e3
  • 7.50e3
  • 7.91e3
  • 7.91e3
  • 8.80e3
  • 8.89e3
  • 1.02e4
  • 1.06e4
  • 1.28e4
  • 1.30e4
  • 1.40e4
  • 1.40e4
  • 1.43e4
  • 1.49e4
89.54
  • 89.54
  • 75.42
  • 74.88
  • 73.52
  • 73.51
  • 70.52
  • 70.24
  • 65.94
  • 64.38
  • 57.07
  • 56.58
  • 53.21
  • 53.16
  • 51.99
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.63e3
  • 4.63e3
84.50
  • 84.50
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
5.36e3
  • 5.36e3
  • 5.81e3
  • 7.91e3
  • 8.64e3
  • 8.87e3
  • 9.32e3
82.04
  • 82.04
  • 80.54
  • 73.51
  • 71.08
  • 70.31
  • 68.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.25e3
  • 6.25e3
79.06
  • 79.06
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.39e3
  • 6.39e3
78.62
  • 78.62
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.27e3
  • 7.27e3
  • 8.93e3
  • 9.88e3
  • 1.04e4
  • 1.20e4
  • 1.22e4
  • 1.24e4
  • 1.43e4
  • 1.63e4
  • 1.89e4
75.66
  • 75.66
  • 70.10
  • 66.93
  • 65.19
  • 59.87
  • 59.01
  • 58.44
  • 51.99
  • 45.55
  • 36.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000098proliferative region
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 1.16e4
  • 1.16e4
  • 1.16e4
  • 1.19e4
  • 1.31e4
  • 1.33e4
  • 1.33e4
  • 1.33e4
  • 1.33e4
  • 1.34e4
  • 1.34e4
71.43
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 61.10
  • 61.10
  • 61.10
  • 59.99
  • 56.24
  • 55.55
  • 55.55
  • 55.55
  • 55.55
  • 54.99
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.00e3
  • 9.00e3
69.88
  • 69.88
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.31e3
  • 9.31e3
68.83
  • 68.83
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.57e3
  • 9.57e3
67.97
  • 67.97
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
  • 1.97e4
65.03
  • 65.03
  • 34.13
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.05e4
  • 1.05e4
64.77
  • 64.77
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.10e4
  • 1.10e4
63.31
  • 63.31
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.17
  • 62.17
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.14e4
  • 1.14e4
  • 1.22e4
  • 1.26e4
61.94
  • 61.94
  • 59.12
  • 57.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.15e4
  • 1.15e4
61.36
  • 61.36
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.16e4
  • 1.16e4
61.04
  • 61.04
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.68
  • 59.68
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.39e4
  • 1.39e4
53.61
  • 53.61
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.90
  • 52.90
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.52e4
  • 1.52e4
  • 1.85e4
48.98
  • 48.98
  • 37.99
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.08
  • 45.08
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.51
  • 44.51
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.14
  • 44.14
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.89
  • 38.89
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.99
  • 35.99
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.22
  • 34.22
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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