D. rerio Gene: si:ch211-125o16.4 - ENSDARG00000056836 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056836
Namesi:ch211-125o16.4
Descriptionsi:ch211-125o16.4 [Source:ZFIN;Acc:ZDB-GENE-131120-100]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
676
  • 676
  • 2.30e3
  • 2.56e3
  • 2.65e3
  • 2.72e3
  • 3.82e3
97.74
  • 97.74
  • 92.32
  • 91.43
  • 91.13
  • 90.89
  • 87.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
753
  • 753
  • 1.17e3
97.48
  • 97.48
  • 96.09
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
763
  • 763
  • 4.42e3
97.45
  • 97.45
  • 85.21
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
1.12e3
  • 1.12e3
  • 2.03e3
  • 2.40e3
  • 3.10e3
  • 4.72e3
  • 5.40e3
  • 5.79e3
  • 5.86e3
  • 6.24e3
  • 6.54e3
  • 6.64e3
  • 1.01e4
  • 1.07e4
96.24
  • 96.24
  • 93.19
  • 91.95
  • 89.62
  • 84.21
  • 81.93
  • 80.62
  • 80.37
  • 79.09
  • 78.11
  • 77.78
  • 66.04
  • 64.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.14e3
  • 1.14e3
96.20
  • 96.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.70e3
  • 1.70e3
94.31
  • 94.31
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.74e3
  • 1.74e3
  • 1.26e4
94.19
  • 94.19
  • 57.75
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
2.48e3
  • 2.48e3
  • 3.13e3
  • 3.25e3
  • 3.26e3
  • 4.02e3
  • 5.64e3
  • 7.07e3
  • 7.15e3
  • 7.45e3
  • 7.68e3
91.71
  • 91.71
  • 89.53
  • 89.12
  • 89.09
  • 86.55
  • 81.12
  • 76.34
  • 76.07
  • 75.05
  • 74.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
3.66e3
  • 3.66e3
  • 7.84e3
  • 7.91e3
87.74
  • 87.74
  • 73.76
  • 73.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.11e3
  • 4.11e3
  • 2.27e4
86.23
  • 86.23
  • 24.13
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.22e3
  • 8.22e3
72.47
  • 72.47
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.45e3
  • 8.45e3
  • 1.83e4
71.70
  • 71.70
  • 38.76
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.44e3
  • 9.44e3
68.41
  • 68.41
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.13e4
  • 1.13e4
62.19
  • 62.19
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.88
  • 51.88
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.41
  • 47.41
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.66e4
  • 1.66e4
44.58
  • 44.58
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.22
  • 40.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
26.48
  • 26.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX511245
EnsemblENSDARG00000056836 (si:ch211-125o16.4)
Uniprot/SPTREMBLF1QQL4, F1QQL4_DANRE
ZFINZDB-GENE-131120-100 (si:ch211-125o16.4)

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