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D. rerio Gene: vamp2 - ENSDARG00000056877 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056877
Namevamp2
Descriptionvesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fj61c06, zgc:73302
Orthologs(s)1 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
36.6
  • 36.6
  • 1.15e4
  • 1.20e4
  • 1.46e4
99.88
  • 99.88
  • 61.34
  • 59.98
  • 51.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000104life cycle
770
  • 770
  • 1.22e4
  • 1.31e4
  • 1.34e4
  • 1.34e4
  • 1.36e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
97.42
  • 97.42
  • 59.08
  • 56.24
  • 54.99
  • 54.99
  • 54.53
  • 50.00
  • 49.99
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
923
  • 923
  • 1.19e3
  • 5.01e3
  • 7.12e3
  • 8.45e3
96.91
  • 96.91
  • 96.01
  • 83.23
  • 76.15
  • 71.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000034Hatching:Pec-fin
1.03e3
  • 1.03e3
  • 1.03e3
  • 1.12e4
  • 1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
96.56
  • 96.56
  • 96.56
  • 62.50
  • 62.50
  • 62.50
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.12e3
  • 1.12e3
  • 3.26e3
96.25
  • 96.25
  • 89.08
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.37e3
  • 4.37e3
85.39
  • 85.39
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.40e3
  • 6.40e3
  • 8.96e3
  • 1.12e4
78.57
  • 78.57
  • 69.99
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.72e3
  • 7.72e3
74.16
  • 74.16
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
8.47e3
  • 8.47e3
  • 1.46e4
71.65
  • 71.65
  • 51.26
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.91e3
  • 9.91e3
66.83
  • 66.83
AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.09e4
  • 1.12e4
  • 1.24e4
66.66
  • 66.66
  • 63.63
  • 62.49
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.44
  • 66.44
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.10e4
  • 1.10e4
  • 1.20e4
  • 1.20e4
  • 1.21e4
  • 1.21e4
  • 1.21e4
  • 1.25e4
63.14
  • 63.14
  • 59.98
  • 59.98
  • 59.50
  • 59.36
  • 59.36
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.12e4
  • 1.12e4
  • 1.16e4
62.49
  • 62.49
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.12e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.20e4
  • 1.20e4
62.49
  • 62.49
  • 62.49
  • 62.48
  • 60.70
  • 60.70
  • 60.70
  • 59.98
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003921pancreas primordium
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.15e4
  • 1.15e4
  • 1.22e4
  • 1.24e4
61.53
  • 61.53
  • 59.08
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000019Gastrula:Shield
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.21e4
  • 1.21e4
  • 1.86e4
59.48
  • 59.48
  • 37.78
AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
  • 1.21e4
  • 1.27e4
  • 1.27e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
59.36
  • 59.36
  • 59.36
  • 57.47
  • 57.47
  • 57.13
  • 56.79
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.31e4
  • 1.31e4
  • 1.70e4
56.14
  • 56.14
  • 42.98
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.19
  • 54.19
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.54e4
  • 1.54e4
48.48
  • 48.48
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.86
  • 47.86
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.64e4
  • 1.64e4
45.21
  • 45.21
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.15
  • 44.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
43.95
  • 43.95
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.29
  • 43.29
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.05
  • 41.05
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.56
  • 38.56
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.51
  • 36.51
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000056877.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000056877.

Cross-references

EnsemblENSDARG00000056877 (vamp2)
ZFINZDB-GENE-030131-8225 (vamp2)
EMBLAL807389, BC059626
Uniprot/SPTREMBLQ7SZZ5, Q7SZZ5_DANRE

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