D. rerio Gene: pcolcea - ENSDARG00000056913 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056913
Namepcolcea
Descriptionprocollagen C-endopeptidase enhancer a [Source:ZFIN;Acc:ZDB-GENE-041014-370]
OrganismDanio rerio (zebrafish)
Synonym(s)fj16f06, polce, si:ch211-237l4.5, wu:fj16f06, zc237l4.5, zgc:136636

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
268
  • 268
99.11
  • 99.11
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
700
  • 700
  • 2.29e3
97.66
  • 97.66
  • 92.33
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
864
  • 864
97.11
  • 97.11
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
900
  • 900
96.99
  • 96.99
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
998
  • 998
96.66
  • 96.66
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.57e3
  • 1.57e3
94.74
  • 94.74
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.83e3
  • 1.83e3
93.87
  • 93.87
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.01e3
  • 2.01e3
  • 1.43e4
93.29
  • 93.29
  • 52.18
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
93.06
  • 93.06
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.23e3
  • 2.23e3
  • 8.32e3
92.53
  • 92.53
  • 72.13
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.58e3
  • 2.58e3
91.37
  • 91.37
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.88e3
  • 2.88e3
90.37
  • 90.37
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.10
  • 89.10
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.91e3
  • 3.91e3
86.92
  • 86.92
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
4.66e3
  • 4.66e3
  • 4.67e3
  • 5.00e3
  • 5.59e3
  • 8.10e3
  • 8.91e3
  • 9.61e3
  • 9.73e3
  • 1.07e4
  • 1.44e4
84.41
  • 84.41
  • 84.35
  • 83.26
  • 81.29
  • 72.87
  • 70.16
  • 67.81
  • 67.43
  • 64.15
  • 51.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
5.14e3
  • 5.14e3
  • 7.05e3
  • 1.05e4
82.80
  • 82.80
  • 76.38
  • 64.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.06e3
  • 6.06e3
  • 8.71e3
  • 9.80e3
  • 1.00e4
  • 1.09e4
  • 1.12e4
  • 1.21e4
  • 1.29e4
  • 1.37e4
  • 1.38e4
  • 1.38e4
  • 1.43e4
  • 1.43e4
  • 1.50e4
79.70
  • 79.70
  • 70.84
  • 67.18
  • 66.48
  • 63.35
  • 62.60
  • 59.63
  • 56.86
  • 54.22
  • 53.91
  • 53.67
  • 52.23
  • 51.99
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.98e3
  • 6.98e3
76.63
  • 76.63
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.62e3
  • 7.62e3
74.49
  • 74.49
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.70e3
  • 7.70e3
74.22
  • 74.22
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
  • 1.48e4
70.25
  • 70.25
  • 50.31
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.83e3
  • 9.83e3
  • 1.52e4
67.09
  • 67.09
  • 49.24
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.87e3
  • 9.87e3
66.95
  • 66.95
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.27e4
  • 1.27e4
57.33
  • 57.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.44
  • 56.44
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.31e4
  • 1.31e4
  • 1.43e4
  • 1.69e4
  • 1.75e4
56.08
  • 56.08
  • 52.05
  • 43.58
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
1.61e4
  • 1.61e4
  • 1.66e4
46.03
  • 46.03
  • 44.32
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.29
  • 41.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLAL807389
EnsemblENSDARG00000056913 (pcolcea)
Uniprot/SPTREMBLF1QUX0, F1QUX0_DANRE, Q7SZZ3, Q7SZZ3_DANRE
ZFINZDB-GENE-041014-370 (pcolcea)

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