D. rerio Gene: tmem88a - ENSDARG00000056920 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056920
Nametmem88a
Descriptiontransmembrane protein 88 a [Source:ZFIN;Acc:ZDB-GENE-040426-1808]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:77242

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.08e3
  • 1.08e3
  • 1.97e3
  • 9.96e3
  • 1.10e4
96.40
  • 96.40
  • 93.41
  • 66.65
  • 63.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.75
  • 88.75
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.94e3
  • 4.94e3
  • 6.04e3
  • 8.31e3
  • 1.42e4
  • 1.77e4
83.45
  • 83.45
  • 79.77
  • 72.17
  • 52.59
  • 40.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.77e3
  • 5.77e3
  • 9.96e3
80.67
  • 80.67
  • 66.65
AEIR
  • AEIR
  • AEIR
UBERON:0004535cardiovascular system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.98e3
  • 5.98e3
  • 6.40e3
  • 6.40e3
  • 9.51e3
  • 9.51e3
79.99
  • 79.99
  • 78.56
  • 78.56
  • 68.17
  • 68.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.43e3
  • 6.43e3
78.47
  • 78.47
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.77e3
  • 6.77e3
  • 1.12e4
77.33
  • 77.33
  • 62.58
AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.03e3
  • 7.03e3
  • 1.10e4
  • 1.10e4
  • 1.17e4
76.46
  • 76.46
  • 63.32
  • 63.32
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011362cranial blood vasculature
  • ZFS:0000027Segmentation:20-25 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
  • 1.31e4
  • 1.41e4
75.00
  • 75.00
  • 56.24
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.92e3
  • 7.92e3
73.47
  • 73.47
AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
7.97e3
  • 7.97e3
  • 8.04e3
  • 9.13e3
73.32
  • 73.32
  • 73.07
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004537blood vasculature
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 1.07e4
69.99
  • 69.99
  • 64.28
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
8.99e3
  • 8.99e3
  • 1.54e4
69.89
  • 69.89
  • 48.54
AEIR
  • AEIR
  • AEIR
UBERON:0001638vein
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.34e3
  • 9.34e3
  • 9.34e3
68.74
  • 68.74
  • 68.74
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.67e3
  • 9.67e3
67.64
  • 67.64
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.05e4
  • 1.19e4
66.65
  • 66.65
  • 64.98
  • 59.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002165endocardium
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.19e4
62.50
  • 62.50
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.71
  • 61.71
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.03
  • 61.03
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.18e4
  • 1.18e4
60.38
  • 60.38
AEIR
  • AEIR
UBERON:0002200vasculature of head
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.35
  • 58.35
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.16
  • 58.16
AEIR
  • AEIR
UBERON:0009881anterior lateral plate mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
  • 1.33e4
57.14
  • 57.14
  • 55.55
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.58
  • 55.58
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.38
  • 55.38
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.49
  • 52.49
AEIR
  • AEIR
CL:0000081blood cell
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0009910posterior lateral plate mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.28
  • 49.28
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.60e4
  • 1.60e4
46.51
  • 46.51
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.65
  • 45.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.55
  • 43.55
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
42.94
  • 42.94
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.77e4
  • 1.77e4
  • 1.80e4
40.78
  • 40.78
  • 39.75
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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