D. rerio Gene: dbr1 - ENSDARG00000056923 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056923
Namedbr1
Descriptiondebranching RNA lariats 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2466]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fc08f08, zgc:63930

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
778
  • 778
  • 832
  • 2.75e3
  • 2.75e3
  • 3.49e3
97.40
  • 97.40
  • 97.22
  • 90.81
  • 90.78
  • 88.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
910
  • 910
96.96
  • 96.96
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
1.77e3
  • 1.77e3
  • 2.50e3
  • 5.64e3
  • 8.72e3
  • 8.98e3
  • 9.13e3
94.07
  • 94.07
  • 91.63
  • 81.10
  • 70.82
  • 69.94
  • 69.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
2.41e3
  • 2.41e3
  • 3.41e3
  • 7.83e3
  • 7.94e3
  • 8.16e3
  • 8.56e3
  • 8.78e3
  • 9.65e3
  • 9.68e3
  • 1.01e4
  • 1.02e4
  • 1.02e4
  • 1.03e4
  • 1.11e4
  • 1.48e4
  • 1.50e4
  • 1.50e4
91.94
  • 91.94
  • 88.58
  • 73.77
  • 73.41
  • 72.66
  • 71.35
  • 70.61
  • 67.69
  • 67.58
  • 66.07
  • 66.00
  • 65.93
  • 65.52
  • 62.97
  • 50.61
  • 49.92
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.51e3
  • 2.51e3
91.59
  • 91.59
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.00e3
  • 3.00e3
89.97
  • 89.97
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.80e3
  • 3.80e3
87.28
  • 87.28
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.62e3
  • 4.62e3
84.53
  • 84.53
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.66e3
  • 4.66e3
84.39
  • 84.39
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
5.14e3
  • 5.14e3
  • 5.31e3
  • 6.08e3
  • 6.12e3
  • 6.63e3
  • 6.96e3
  • 7.21e3
  • 7.43e3
  • 8.61e3
  • 1.04e4
82.79
  • 82.79
  • 82.24
  • 79.64
  • 79.52
  • 77.80
  • 76.68
  • 75.85
  • 75.11
  • 71.19
  • 65.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.55e3
  • 5.55e3
81.44
  • 81.44
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.85e3
  • 5.85e3
80.40
  • 80.40
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
80.17
  • 80.17
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
77.50
  • 77.50
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.84e3
  • 6.84e3
77.11
  • 77.11
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.04e3
  • 7.04e3
  • 1.50e4
76.42
  • 76.42
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.11e3
  • 7.11e3
76.18
  • 76.18
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.19e3
  • 7.19e3
  • 8.10e3
  • 1.49e4
75.94
  • 75.94
  • 72.88
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.37e3
  • 7.37e3
75.33
  • 75.33
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.39e3
  • 7.39e3
75.25
  • 75.25
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.45e3
  • 7.45e3
75.04
  • 75.04
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.58e3
  • 7.58e3
  • 7.66e3
  • 9.49e3
  • 9.88e3
74.61
  • 74.61
  • 74.36
  • 68.22
  • 66.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.75e3
  • 7.75e3
  • 9.30e3
74.06
  • 74.06
  • 68.85
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.96e3
  • 7.96e3
73.34
  • 73.34
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.42e3
  • 8.42e3
  • 1.17e4
71.81
  • 71.81
  • 60.83
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.52e3
  • 8.52e3
71.47
  • 71.47
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.95e3
  • 8.95e3
70.05
  • 70.05
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
8.99e3
  • 8.99e3
  • 9.42e3
  • 1.08e4
69.91
  • 69.91
  • 68.46
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
69.75
  • 69.75
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.10e3
  • 9.10e3
69.54
  • 69.54
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.52e3
  • 9.52e3
  • 1.00e4
68.13
  • 68.13
  • 66.43
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.91e3
  • 9.91e3
66.84
  • 66.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX511265
EnsemblENSDARG00000056923 (dbr1)
Uniprot/SPTREMBLA8WHX2, A8WHX2_DANRE
ZFINZDB-GENE-030131-2466 (dbr1)

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