D. rerio Gene: lhx9 - ENSDARG00000056979 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000056979
Namelhx9
DescriptionLIM homeobox 9 [Source:ZFIN;Acc:ZDB-GENE-050417-210]
OrganismDanio rerio (zebrafish)
Synonym(s)q3lhm3, si:dkey-121a9.2, zgc:112196
Orthologs(s)19 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.16e3
  • 1.16e3
  • 1.17e4
96.13
  • 96.13
  • 60.96
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
2.26e3
  • 2.26e3
  • 1.03e4
  • 1.34e4
92.42
  • 92.42
  • 65.58
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
2.40e3
  • 2.40e3
  • 3.36e3
  • 6.61e3
  • 9.20e3
  • 1.04e4
  • 1.10e4
  • 1.40e4
  • 1.65e4
  • 1.78e4
91.97
  • 91.97
  • 88.76
  • 77.88
  • 69.18
  • 65.27
  • 63.19
  • 53.13
  • 44.72
  • 40.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.46e3
  • 3.46e3
88.41
  • 88.41
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
3.73e3
  • 3.73e3
  • 9.96e3
  • 1.49e4
87.50
  • 87.50
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
3.95e3
  • 3.95e3
  • 8.27e3
  • 1.13e4
86.76
  • 86.76
  • 72.31
  • 62.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
5.00e3
  • 5.00e3
  • 9.89e3
  • 1.07e4
  • 1.18e4
  • 1.48e4
  • 1.66e4
  • 1.77e4
  • 1.78e4
  • 1.79e4
83.27
  • 83.27
  • 66.89
  • 64.10
  • 60.44
  • 50.29
  • 44.51
  • 40.62
  • 40.38
  • 40.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.88e3
  • 5.88e3
  • 8.23e3
  • 8.40e3
80.33
  • 80.33
  • 72.43
  • 71.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
  • 1.85e4
64.90
  • 64.90
  • 38.03
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.06e4
  • 1.06e4
  • 1.42e4
64.56
  • 64.56
  • 52.60
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.17e4
  • 1.17e4
  • 1.36e4
60.70
  • 60.70
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.76
  • 58.76
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
1.26e4
  • 1.26e4
57.87
  • 57.87
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.28e4
  • 1.28e4
  • 1.34e4
57.11
  • 57.11
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.44e4
  • 1.44e4
  • 1.45e4
51.86
  • 51.86
  • 51.35
AEIR
  • AEIR
  • AEIR
UBERON:0003936postoptic commissure
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0005778hypocretin-secreting neuron (Danio)
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.28
  • 41.28
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.55
  • 29.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000056979.

Cross-references

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