Gene: snai1a - ENSDARG00000056995 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000056995
Name	snai1a
Description	snail family zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-990415-255]
Organism	Danio rerio (zebrafish)
Synonym(s)	cb643, sna-1, sna1, snai1, snail1, snail1a, zgc:109820

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0004734	gastrula	[+] 6 stages ZFS:0000019Gastrula:Shield ZFS:0000017Gastrula:50%-epiboly UBERON:0000109gastrula stage ZFS:0000022Gastrula:Bud ZFS:0000020Gastrula:75%-epiboly ZFS:0000021Gastrula:90%-epiboly	553 553 713 1.09e3 1.17e3 1.19e3 1.23e3	98.15 98.15 97.61 96.35 96.09 96.02 95.87	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	554 554	98.15 98.15	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	718 718	97.60 97.60	AEIR AEIR
UBERON:0002329	somite	[+] 7 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000024Segmentation:5-9 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000023Segmentation:1-4 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000025Segmentation:10-13 somites	747 747 747 1.87e3 1.87e3 2.04e3 3.09e3 4.82e3	97.50 97.50 97.50 93.75 93.75 93.18 89.65 83.86	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 5 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome ZFS:0000016Blastula:30%-epiboly ZFS:0000014Blastula:Sphere ZFS:0000009Blastula:256-cell	802 802 861 1.64e3 2.36e3 4.40e3	97.32 97.32 97.12 94.51 92.09 85.26	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002533	post-anal tail bud	[+] 9 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000026Segmentation:14-19 somites ZFS:0000022Gastrula:Bud ZFS:0000021Gastrula:90%-epiboly	830 830 830 830 1.15e3 1.36e3 1.49e3 1.57e3 8.53e3 1.49e4	97.22 97.22 97.22 97.22 96.16 95.46 95.00 94.74 71.43 50.00	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000926	mesoderm	[+] 13 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000017Gastrula:50%-epiboly ZFS:0000018Gastrula:Germ-ring ZFS:0000019Gastrula:Shield ZFS:0000021Gastrula:90%-epiboly ZFS:0000022Gastrula:Bud ZFS:0000020Gastrula:75%-epiboly	934 934 996 996 1.87e3 1.99e3 1.99e3 1.99e3 3.45e3 3.45e3 3.45e3 3.45e3 3.45e3 4.27e3	96.88 96.88 96.67 96.67 93.75 93.33 93.33 93.33 88.46 88.46 88.46 88.46 88.46 85.71	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0005253	head mesenchyme	[+] 7 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	996 996 996 996 2.99e3 2.99e3 3.98e3 4.27e3	96.67 96.67 96.67 96.67 90.00 90.00 86.66 85.71	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0005886	post-hyoid pharyngeal arch skeleton	[+] 8 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	1.15e3 1.15e3 1.42e3 1.49e3 1.49e3 4.39e3 5.27e3 5.50e3 5.50e3	96.16 96.16 95.24 95.00 95.00 85.29 82.35 81.57 81.57	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 20 stages ZFS:0000019Gastrula:Shield ZFS:0000020Gastrula:75%-epiboly UBERON:0000106zygote stage ZFS:0000021Gastrula:90%-epiboly ZFS:0000022Gastrula:Bud ZFS:0000024Segmentation:5-9 somites ZFS:0000026Segmentation:14-19 somites UBERON:00072322 cell stage ZFS:0000015Blastula:Dome ZFS:0000029Pharyngula:Prim-5 ZFS:0000014Blastula:Sphere ZFS:0000030Pharyngula:Prim-15 ZFS:0000033Hatching:Long-pec ZFS:0000042Juvenile:Days 30-44 UBERON:0000068embryo stage ZFS:0000036Larval:Day 4 ZFS:0000040Larval:Days 14-20 UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5 UBERON:0000104life cycle	1.34e3 1.34e3 1.64e3 2.42e3 2.45e3 2.84e3 2.99e3 5.46e3 6.79e3 7.47e3 8.84e3 8.96e3 9.09e3 1.00e4 1.12e4 1.28e4 1.32e4 1.34e4 1.37e4 1.40e4 1.50e4	95.52 95.52 94.52 91.91 91.80 90.50 89.97 81.73 77.27 74.99 70.39 69.99 69.58 66.36 62.40 57.08 55.89 55.14 54.18 53.05 49.92	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0005419	pectoral appendage bud	[+] 4 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000031Pharyngula:Prim-25	1.42e3 1.42e3 1.66e3 1.66e3 1.12e4	95.24 95.24 94.44 94.44 62.49	AEIR AEIR AEIR AEIR AEIR
UBERON:0003077	paraxial mesoderm	[+] 5 stages ZFS:0000025Segmentation:10-13 somites ZFS:0000022Gastrula:Bud ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000021Gastrula:90%-epiboly	1.48e3 1.48e3 5.97e3 6.64e3 7.47e3 1.49e4	95.06 95.06 80.00 77.77 74.99 49.99	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0003082	myotome	[+] 4 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites	1.49e3 1.49e3 1.49e3 1.66e3 1.66e3	95.00 95.00 95.00 94.44 94.44	AEIR AEIR AEIR AEIR AEIR
UBERON:0003059	presomitic mesoderm	[+] 8 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000024Segmentation:5-9 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000023Segmentation:1-4 somites ZFS:0000022Gastrula:Bud	1.66e3 1.66e3 1.74e3 1.87e3 1.87e3 2.04e3 2.13e3 2.13e3 1.19e4	94.44 94.44 94.18 93.75 93.75 93.18 92.86 92.86 60.00	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
ZFA:0000003	adaxial cell (Danio)	[+] 5 stages ZFS:0000024Segmentation:5-9 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000022Gastrula:Bud	1.66e3 1.66e3 1.76e3 1.87e3 2.49e3 8.96e3	94.44 94.44 94.12 93.75 91.67 70.00	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0007010	cleaving embryo	[+] 1 stage ZFS:0000005Cleavage:16-cell	1.86e3 1.86e3	93.79 93.79	AEIR AEIR
UBERON:0000922	embryo	[+] 10 stages ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000037Larval:Day 5	2.34e3 2.34e3 2.77e3 3.85e3 4.88e3 4.94e3 5.04e3 8.41e3 8.52e3 9.98e3 1.26e4	92.17 92.17 90.71 87.11 83.66 83.47 83.14 71.84 71.48 66.58 57.64	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0007285	presumptive paraxial mesoderm	[+] 3 stages ZFS:0000020Gastrula:75%-epiboly ZFS:0000021Gastrula:90%-epiboly ZFS:0000019Gastrula:Shield	2.49e3 2.49e3 9.96e3 1.49e4	91.67 91.67 66.66 50.00	AEIR AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.88e3 2.88e3	90.38 90.38	AEIR AEIR
UBERON:0007282	presumptive segmental plate	[+] 6 stages ZFS:0000022Gastrula:Bud ZFS:0000017Gastrula:50%-epiboly ZFS:0000018Gastrula:Germ-ring ZFS:0000019Gastrula:Shield ZFS:0000020Gastrula:75%-epiboly ZFS:0000021Gastrula:90%-epiboly	2.99e3 2.99e3 3.32e3 3.32e3 3.32e3 3.32e3 3.32e3	90.00 90.00 88.89 88.89 88.89 88.89 88.89	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0009620	tail bud paraxial mesoderm	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	3.35e3 3.35e3	88.77 88.77	AEIR AEIR
UBERON:0007269	pectoral appendage musculature	[+] 5 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec ZFS:0000034Hatching:Pec-fin	3.73e3 3.73e3 3.73e3 4.72e3 4.72e3 1.49e4	87.50 87.50 87.50 84.20 84.20 50.00	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001042	chordate pharynx	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec	3.74e3 3.74e3 4.15e3	87.49 87.49 86.11	AEIR AEIR AEIR
UBERON:0004879	marginal zone of embryo	[+] 9 stages ZFS:0000019Gastrula:Shield ZFS:0000021Gastrula:90%-epiboly ZFS:0000020Gastrula:75%-epiboly ZFS:0000022Gastrula:Bud ZFS:0000018Gastrula:Germ-ring ZFS:0000014Blastula:Sphere ZFS:0000015Blastula:Dome ZFS:0000017Gastrula:50%-epiboly ZFS:0000016Blastula:30%-epiboly	3.93e3 3.93e3 4.27e3 4.72e3 4.98e3 5.98e3 6.40e3 6.40e3 6.54e3 8.04e3	86.84 86.84 85.71 84.20 83.33 79.99 78.57 78.57 78.12 73.07	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	4.06e3 4.06e3	86.40 86.40	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	4.89e3 4.89e3 1.09e4	83.64 83.64 63.34	AEIR AEIR AEIR
UBERON:0000089	hypoblast (generic)	[+] 1 stage ZFS:0000018Gastrula:Germ-ring	4.98e3 4.98e3	83.34 83.34	AEIR AEIR
ZFA:0000541	marginal blastomere (Danio)	[+] 3 stages ZFS:0000015Blastula:Dome ZFS:0000014Blastula:Sphere ZFS:0000016Blastula:30%-epiboly	4.98e3 4.98e3 5.60e3 6.40e3	83.33 83.33 81.25 78.57	AEIR AEIR AEIR AEIR
UBERON:4000164	caudal fin	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000033Hatching:Long-pec	5.97e3 5.97e3 6.33e3	80.00 80.00 78.82	AEIR AEIR AEIR
UBERON:0002199	integument	[+] 1 stage UBERON:0000066fully formed stage	6.76e3 6.76e3	77.35 77.35	AEIR AEIR
UBERON:0000955	brain	[+] 2 stages ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage	6.79e3 6.79e3 1.89e4	77.26 77.26 36.60	AEIR AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	7.40e3 7.40e3	75.24 75.24	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	7.56e3 7.56e3	74.69 74.69	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	7.73e3 7.73e3	74.13 74.13	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	7.92e3 7.92e3	73.49 73.49	AEIR AEIR
UBERON:0002548	larva	[+] 3 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5 ZFS:0000035Larval:Protruding-mouth	8.38e3 8.38e3 8.91e3 1.02e4	71.95 71.95 70.17 65.96	AEIR AEIR AEIR AEIR
UBERON:2001378	axial hypoblast	[+] 1 stage ZFS:0000020Gastrula:75%-epiboly	8.96e3 8.96e3	70.00 70.00	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	9.65e3 9.65e3	67.68 67.68	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.01e4 1.01e4	66.31 66.31	AEIR AEIR
UBERON:0003068	axial mesoderm	[+] 3 stages ZFS:0000020Gastrula:75%-epiboly ZFS:0000024Segmentation:5-9 somites ZFS:0000021Gastrula:90%-epiboly	1.07e4 1.07e4 1.24e4 1.31e4	64.28 64.28 58.33 56.24	AEIR AEIR AEIR AEIR
UBERON:0003062	primitive knot	[+] 1 stage ZFS:0000019Gastrula:Shield	1.09e4 1.09e4	63.63 63.63	AEIR AEIR
UBERON:0003114	pharyngeal arch 3	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000034Hatching:Pec-fin ZFS:0000031Pharyngula:Prim-25	1.12e4 1.12e4 1.49e4 1.49e4	62.50 62.50 50.00 50.00	AEIR AEIR AEIR AEIR
UBERON:0000033	head	[+] 4 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000035Larval:Protruding-mouth UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.12e4 1.12e4 1.12e4 1.33e4 1.34e4	62.50 62.50 62.50 55.62 55.23	AEIR AEIR AEIR AEIR AEIR
UBERON:0007812	post-anal tail	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.12e4 1.12e4	62.50 62.50	AEIR AEIR
UBERON:0002082	cardiac ventricle	[+] 1 stage UBERON:0000066fully formed stage	1.15e4 1.15e4	61.66 61.66	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.20e4 1.20e4	59.77 59.77	AEIR AEIR
UBERON:2000088	YSL	[+] 1 stage ZFS:0000019Gastrula:Shield	1.23e4 1.23e4	58.80 58.80	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 2 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0000066fully formed stage	1.24e4 1.24e4 1.50e4	58.33 58.33 49.94	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.26e4 1.26e4	57.88 57.88	AEIR AEIR
UBERON:0000966	retina	[+] 2 stages ZFS:0000031Pharyngula:Prim-25 ZFS:0000033Hatching:Long-pec	1.30e4 1.30e4 1.32e4	56.42 56.42 55.96	AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.33e4 1.33e4	55.36 55.36	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.36e4 1.36e4	54.48 54.48	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.37e4 1.37e4	54.17 54.17	AEIR AEIR
UBERON:0000473	testis	[+] 2 stages UBERON:0000104life cycle UBERON:0000066fully formed stage	1.41e4 1.41e4 1.47e4	52.81 52.81 50.69	AEIR AEIR AEIR
UBERON:0003051	ear vesicle	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.44e4 1.44e4	51.62 51.62	AEIR AEIR
UBERON:0002541	germ ring	[+] 2 stages ZFS:0000018Gastrula:Germ-ring ZFS:0000020Gastrula:75%-epiboly	1.49e4 1.49e4 1.49e4	50.00 50.00 50.00	AEIR AEIR AEIR
UBERON:0003115	pharyngeal arch 4	[+] 3 stages ZFS:0000034Hatching:Pec-fin ZFS:0000029Pharyngula:Prim-5 ZFS:0000031Pharyngula:Prim-25	1.49e4 1.49e4 1.49e4 1.49e4	50.00 50.00 50.00 50.00	AEIR AEIR AEIR AEIR
UBERON:0003116	pharyngeal arch 5	[+] 2 stages ZFS:0000034Hatching:Pec-fin ZFS:0000031Pharyngula:Prim-25	1.49e4 1.49e4 1.49e4	50.00 50.00 50.00	AEIR AEIR AEIR
UBERON:0003117	pharyngeal arch 6	[+] 2 stages ZFS:0000031Pharyngula:Prim-25 ZFS:0000034Hatching:Pec-fin	1.49e4 1.49e4 1.49e4	50.00 50.00 50.00	AEIR AEIR AEIR
UBERON:0003066	pharyngeal arch 2	[+] 3 stages ZFS:0000034Hatching:Pec-fin ZFS:0000031Pharyngula:Prim-25 ZFS:0000029Pharyngula:Prim-5	1.49e4 1.49e4 1.49e4 1.49e4	50.00 50.00 50.00 50.00	AEIR AEIR AEIR AEIR
UBERON:0004362	pharyngeal arch 1	[+] 3 stages ZFS:0000034Hatching:Pec-fin ZFS:0000031Pharyngula:Prim-25 ZFS:0000029Pharyngula:Prim-5	1.49e4 1.49e4 1.49e4 1.49e4	50.00 50.00 50.00 50.00	AEIR AEIR AEIR AEIR
UBERON:0004749	blastodisc	[+] 1 stage UBERON:0000106zygote stage	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0005884	hyoid arch skeleton	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
ZFA:0000093	blastomere (Danio)	[+] 1 stage UBERON:00072322 cell stage	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:2000711	DEL	[+] 1 stage ZFS:0000016Blastula:30%-epiboly	1.49e4 1.49e4	50.00 50.00	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Cross-references

EMBL	BC092698, BC152602, BC164590, CR555298, X74790
Ensembl	ENSDARG00000056995 (snai1a)
Uniprot/SPTREMBL	F1QGE1, F1QGE1_DANRE, Q90274, Q90274_DANRE
ZFIN	ZDB-GENE-990415-255 (snai1a)