Gene: slc6a4b - ENSDARG00000057017 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000057017
Name	slc6a4b
Description	solute carrier family 6 (neurotransmitter transporter), member 4b [Source:ZFIN;Acc:ZDB-GENE-060314-2]
Organism	Danio rerio (zebrafish)
Synonym(s)	sertb
Orthologs(s)	8 orthologs
Paralog(s)	29 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0001896	medulla oblongata	[+] 2 stages ZFS:0000035Larval:Protruding-mouth ZFS:0000034Hatching:Pec-fin	1.12e4 1.12e4 1.49e4	62.50 62.50 50.00	AEIR AEIR AEIR
UBERON:0001791	inner nuclear layer of retina	[+] 1 stage ZFS:0000034Hatching:Pec-fin	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
CL:0000561	amacrine cell	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.61e4 1.61e4	46.09 46.09	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.79e4 1.79e4	40.07 40.07	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.90e4 1.90e4	36.39 36.39	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	2.11e4 2.11e4	29.40 29.40	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	2.15e4 2.15e4 2.49e4	28.05 28.05 16.52	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage	2.16e4 2.16e4 2.24e4	27.69 27.69 25.10	AEIR AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	2.32e4 2.32e4	22.25 22.25	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	2 species Monodelphis domestica (opossum) Xenopus tropicalis (western clawed frog)	2 genes ENSMODG00000004252 ENSXETG00000018650 slc6a4	Compare expression	[+]
Bilateria	8 species Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Monodelphis domestica (opossum) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila virilis Drosophila yakuba	8 genes FBgn0010414 SerT WBGene00003387 mod-5 ENSMODG00000004252 ENSXETG00000018650 slc6a4 FBgn0088297 GF11257 FBgn0141078 GI18339 FBgn0207874 GJ20736 FBgn0229270 GE11465	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000057017.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	1 gene ENSDARG00000061165 slc6a4a	Compare expression	[+]
Eukaryota	29 genes ENSDARG00000000730 slc6a13 ENSDARG00000001354 slc6a13l ENSDARG00000002405 si:ch211-225b11.1 ENSDARG00000004219 SLC6A3 ENSDARG00000012534 slc6a6a ENSDARG00000016141 slc6a2 ENSDARG00000018534 slc6a9 ENSDARG00000018621 slc6a19a.1 ENSDARG00000029866 slc6a14 ENSDARG00000030006 SLC6A7 ENSDARG00000039647 slc6a1b ENSDARG00000041205 slc6a1l ENSDARG00000043646 slc6a8 ENSDARG00000045944 slc6a1a ENSDARG00000046091 si:ch211-283g2.1 ENSDARG00000061165 slc6a4a ENSDARG00000061480 si:ch211-132b12.1 ENSDARG00000062821 slc6a15 ENSDARG00000067567 SLC6A13 ENSDARG00000068363 si:ch211-132b12.3 ENSDARG00000068372 zgc:158427 ENSDARG00000068387 slc6a18 ENSDARG00000071235 si:ch211-117c9.5 ENSDARG00000074002 slc6a11a ENSDARG00000087981 slc6a11b ENSDARG00000091560 slc6a19a.2 ENSDARG00000094546 si:ch211-132b12.6 ENSDARG00000094946 si:ch211-132b12.2 ENSDARG00000098438 slc6a6b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000057017.

Cross-references

Ensembl	ENSDARG00000057017 (slc6a4b)
ZFIN	ZDB-GENE-060314-2 (slc6a4b)
EMBL	BC163340, BC163371, BX323811, BX547941
Uniprot/SPTREMBL	B3DJ31, B3DJ31_DANRE