D. rerio Gene: slc6a4b - ENSDARG00000057017 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000057017
Nameslc6a4b
Descriptionsolute carrier family 6 (neurotransmitter transporter), member 4b [Source:ZFIN;Acc:ZDB-GENE-060314-2]
OrganismDanio rerio (zebrafish)
Synonym(s)sertb
Orthologs(s)8 orthologs
Paralog(s)29 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001896medulla oblongata
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000034Hatching:Pec-fin
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000561amacrine cell
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.61e4
  • 1.61e4
46.09
  • 46.09
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.79e4
  • 1.79e4
40.07
  • 40.07
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.39
  • 36.39
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.40
  • 29.40
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.15e4
  • 2.15e4
  • 2.49e4
28.05
  • 28.05
  • 16.52
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
2.16e4
  • 2.16e4
  • 2.24e4
27.69
  • 27.69
  • 25.10
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.32e4
  • 2.32e4
22.25
  • 22.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota29 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000057017.

Cross-references

EnsemblENSDARG00000057017 (slc6a4b)
ZFINZDB-GENE-060314-2 (slc6a4b)
EMBLBC163340, BC163371, BX323811, BX547941
Uniprot/SPTREMBLB3DJ31, B3DJ31_DANRE

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